Gao Q, Weber H P, Craven B M, McMullan R K
Department of Crystallography, University of Pittsburgh, PA 15260.
Acta Crystallogr B. 1994 Dec 1;50 ( Pt 6):695-703. doi: 10.1107/s0108768194003599.
Neutron diffraction data for suberic acid [HOOC(CH2)6COOH] were collected at 18.4, 75 and 123 K using a twinned crystal. The neutron data reduction included derivation of a complete set of corrected intensities, as if from a single crystal. This was followed by full-matrix structure refinement in the usual way. The molecule has an almost fully extended conformation with the hydrocarbon chains packed in an orthorhombic mode. Molecules form infinite hydrogen-bonded chains with crystallographic inversion centers occuring at the center and at the ends of each molecule. We suggest that at the twin boundary the hydrogen bonding is different, involving only the hydroxyl groups as both donors and acceptors. Accurate bond lengths have been obtained with corrections for thermal vibration (harmonic for C--C, C--O; harmonic and anharmonic for C--H). Values at the three temperatures agree well in terms of their e.s.d.'s (0.001 A for C--C and C--O and 0.005 A for C--H). Similar agreement is obtained for the corrected bond angles (e.s.d.'s 0.1 degrees for C--C--C, 0.2 degrees for H--C--H). For the methylene groups, the observed m.s. displacement parameters at each temperature are significantly greater at the middle of the molecule than at the ends. This indicates that the molecular backbone is vibrating internally. The thermal vibrations of the molecule have been analysed in terms of a simple segmented body model.
使用孪晶收集了在18.4、75和123 K温度下的辛二酸[HOOC(CH₂)₆COOH]的中子衍射数据。中子数据处理包括推导一套完整的校正强度,就好像数据来自单晶一样。随后按常规方法进行全矩阵结构精修。该分子具有几乎完全伸展的构象,烃链以正交模式堆积。分子形成无限的氢键链,在每个分子的中心和末端出现晶体学反演中心。我们认为在孪晶边界处氢键不同,仅涉及羟基作为供体和受体。通过对热振动进行校正(C—C、C—O为简谐振动;C—H为简谐和非简谐振动)得到了精确的键长。三个温度下的值在其标准偏差方面吻合良好(C—C和C—O为0.001 Å,C—H为0.005 Å)。对于校正后的键角也得到了类似的吻合(C—C—C的标准偏差为0.1°,H—C—H的标准偏差为0.2°)。对于亚甲基,在每个温度下观察到的均方位移参数在分子中部明显大于末端。这表明分子主链在内部振动。已根据一个简单的分段体模型对分子的热振动进行了分析。