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荧光方法揭示的大肠杆菌甲硫氨酸起始转运核糖核酸(tRNAMetf)的构象特性

Conformational peculiarities of tRNAMetf from E. coli as revealed by fluorescent methods.

作者信息

Surovaya A N, Borissova O F

出版信息

Mol Biol Rep. 1976 Jul;2(6):487-95. doi: 10.1007/BF00356938.

DOI:10.1007/BF00356938
PMID:785233
Abstract

Conformational transitions in several individual tRNAs (tRNAMetf, tRNAPhe from E. coli, tRNAVal1, tRNASer, tRNAPhe from yeast) have been studied under various environmental conditions. The binding isotherms studies for dyes-tRNA complexes exhibited similarities in conformational states of all tRNAs investigated at low ionic strength (0.01 M NaCl). By contrast, at high ionic strength (0.4 M NaCl or 2 X 10(-4) M Mg2+) a marked difference is found in structural features of tRNAMetf as compared with other tRNAs used. The tRNAMetf is the only tRNA species that does not reveal the strong type of complexes with ethidium bromide, acriflavine and acridine orange.

摘要

在多种环境条件下,对几种单个的转运核糖核酸(来自大肠杆菌的甲硫氨酸转运核糖核酸、苯丙氨酸转运核糖核酸,缬氨酸转运核糖核酸1、丝氨酸转运核糖核酸、来自酵母的苯丙氨酸转运核糖核酸)的构象转变进行了研究。对染料 - 转运核糖核酸复合物的结合等温线研究表明,在低离子强度(0.01M氯化钠)下,所有被研究的转运核糖核酸在构象状态上具有相似性。相比之下,在高离子强度(0.4M氯化钠或2×10⁻⁴M镁离子)下,与所使用的其他转运核糖核酸相比,甲硫氨酸转运核糖核酸的结构特征存在显著差异。甲硫氨酸转运核糖核酸是唯一一种与溴化乙锭、吖啶黄和吖啶橙不形成强类型复合物的转运核糖核酸种类。

相似文献

1
Conformational peculiarities of tRNAMetf from E. coli as revealed by fluorescent methods.荧光方法揭示的大肠杆菌甲硫氨酸起始转运核糖核酸(tRNAMetf)的构象特性
Mol Biol Rep. 1976 Jul;2(6):487-95. doi: 10.1007/BF00356938.
2
Mechanism of discrimination between cognate and non-cognate tRNAs by phenylalanyl-tRNA synthetase from yeast.酵母苯丙氨酰 - tRNA合成酶区分同源和非同源tRNA的机制。
Eur J Biochem. 1976 Sep;68(1):81-93. doi: 10.1111/j.1432-1033.1976.tb10766.x.
3
[Conformational transitions in tRNA fMet from E. coli induced by monovalent and divalent ions].
Mol Biol (Mosk). 1976 Nov-Dec;10(6):1403-12.
4
Amino-acid incorporation into tRNA fragments and into heterologous combinations of fragments.氨基酸掺入tRNA片段以及片段的异源组合中。
Eur J Biochem. 1975 Nov 15;59(2):405-13. doi: 10.1111/j.1432-1033.1975.tb02468.x.
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tRNA conformation and magnesium binding. A study of a yeast phenylalanine-specific tRNA by a fluorescent indicator and differential melting curves.转运核糖核酸(tRNA)的构象与镁离子结合。利用荧光指示剂和差示熔解曲线对酵母苯丙氨酸特异性转运核糖核酸的研究。
Eur J Biochem. 1975 Jun 16;55(1):271-84. doi: 10.1111/j.1432-1033.1975.tb02160.x.
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Kinetics of acyl transfer ribonucleic acid complexes of Escherichia coli phenylalanyl-tRNA synthetase. A conformational change is rate limiting in catalysis.大肠杆菌苯丙氨酰 - tRNA合成酶的酰基转移核糖核酸复合物的动力学。催化过程中构象变化是限速步骤。
Biochemistry. 1982 May 11;21(10):2460-7. doi: 10.1021/bi00539a027.
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Equivalent and non-equivalent binding sites for tRNA on aminoacyl-tRNA synthetases.氨酰-tRNA合成酶上tRNA的等效和非等效结合位点。
Eur J Biochem. 1975 Jul 15;55(3):517-29. doi: 10.1111/j.1432-1033.1975.tb02189.x.
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On the structure and conformational dynamics of yeast phenylalanine-accepting transfer ribonucleic acid in solution.溶液中酵母苯丙氨酸接受转移核糖核酸的结构与构象动力学
Biochemistry. 1979 Oct 16;18(21):4588-99. doi: 10.1021/bi00588a020.
9
Isotherms of the adsorption of acridine dyes on tRNA.
Mol Biol. 1974 Jan;7(4):403-10.
10
Effects of magnesium and ionic strength on the diffusion and charge properties of several single tRNA species.镁和离子强度对几种单个转运RNA物种的扩散和电荷性质的影响。
Nucleic Acids Res. 1981 May 25;9(10):2411-20. doi: 10.1093/nar/9.10.2411.

引用本文的文献

1
Structural investigation of nuclear RNP particles containing pre-mRNA by different fluorescence techniques.运用不同荧光技术对含有前体信使核糖核酸的核核糖核蛋白颗粒进行结构研究。
Nucleic Acids Res. 1981 Feb 11;9(3):663-81. doi: 10.1093/nar/9.3.663.

本文引用的文献

1
A fluorescent complex between ethidium bromide and nucleic acids. Physical-chemical characterization.溴化乙锭与核酸之间的荧光复合物。物理化学特性
J Mol Biol. 1967 Jul 14;27(1):87-106. doi: 10.1016/0022-2836(67)90353-1.
2
Structural requirements for the binding of ethidium to nucleic acids.溴化乙锭与核酸结合的结构要求。
Biochim Biophys Acta. 1966 Feb 21;114(2):234-44. doi: 10.1016/0005-2787(66)90305-4.
3
Calculation of binding isotherms for heterogenous polymers.非均相聚合物结合等温线的计算。
Biopolymers. 1968 Apr;6(4):575-84. doi: 10.1002/bip.1968.360060411.
4
Circular dichroism studies of deoxyribonucleic acid complexes with arginine-rich histone IV (f2al).脱氧核糖核酸与富含精氨酸的组蛋白IV(f2al)复合物的圆二色性研究。
Biochemistry. 1971 Apr 27;10(9):1675-83. doi: 10.1021/bi00785a027.
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Interaction of acriflavine with DNA and RNA.吖啶黄与DNA和RNA的相互作用。
J Mol Biol. 1969 Mar 28;40(3):491-5. doi: 10.1016/0022-2836(69)90167-3.
6
Studies of the binding of ethidium bromide to transfer ribonucleic acid: absorption, fluorescence, ultracentrifugation and kinetic investigations.溴化乙锭与转移核糖核酸结合的研究:吸收、荧光、超速离心及动力学研究。
J Mol Biol. 1969 Dec 14;46(2):251-68. doi: 10.1016/0022-2836(69)90420-3.
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The binding of proflavine to transfer ribonucleic acid: dependence on secondary structure.硫酸原黄素与转移核糖核酸的结合:对二级结构的依赖性
Biochim Biophys Acta. 1968 Oct 29;166(3):616-27. doi: 10.1016/0005-2787(68)90368-7.
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Cooperative binding of magnesium to transfer ribonucleic acid studied by a fluorescent probe.用荧光探针研究镁与转移核糖核酸的协同结合
Biochemistry. 1974 Apr 23;13(9):1841-52. doi: 10.1021/bi00706a012.
9
The involvement of 5S RNA in the binding of tRNA to ribosomes.5S RNA参与转运RNA与核糖体的结合。
Biochem Biophys Res Commun. 1973 Oct 1;54(3):942-8. doi: 10.1016/0006-291x(73)90785-7.
10
The binding of ethidium bromide to different conformations of tRNA. Unfolding of tertiary structure.溴化乙锭与不同构象的转运核糖核酸(tRNA)的结合。三级结构的展开。
Eur J Biochem. 1973 Mar 15;33(3):511-6. doi: 10.1111/j.1432-1033.1973.tb02710.x.