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140个高加索家庭中弗里德赖希共济失调的连锁不平衡分析:疾病基因座定位及等位基因异质性评估

Linkage disequilibrium analysis of Friedreich's ataxia in 140 Caucasian families: positioning of the disease locus and evaluation of allelic heterogeneity.

作者信息

Sirugo G, Cocozza S, Brice A, Cavalcanti F, De Michele G, Dones I, Filla A, Koenig M, Lorenzetti D, Monticelli A

机构信息

Institut de Chimie Biologique, INSERM U-184, CNRS-LGME, Strasbourg, France.

出版信息

Eur J Hum Genet. 1993;1(2):133-43. doi: 10.1159/000472400.

DOI:10.1159/000472400
PMID:7914465
Abstract

We investigated linkage disequilibrium between Friedreich's ataxia (FRDA) and four tightly linked multi-allele markers in 140 families from France and Italy. These markers include three microsatellites (D9S111, D9S15 and D9S110) and one RFLP (D9S5). Their chromosomal order, D9S111-D9S15-D9S110-D9S5, had previously been established by physical mapping. Linkage disequilibrium was evaluated between each marker and FRDA and between markers. Extended haplotypes were obtained and their frequencies on FRDA and normal chromosomes were evaluated. We obtained evidence of strong allelic association of FRDA with D9S5 only. Analysis of linkage disequilibrium between markers revealed a significant decrease between D9S110 and D9S5, suggesting the presence of a recombination hot spot in the interval between these markers. Probably for this reason, no major FRDA-associated extended haplotype could be identified. Our data suggest the presence of a few common disease-causing mutations in the examined population, and indicate a putative localization for the FRDA gene. Transcribed sequences have been found in this candidate region.

摘要

我们在来自法国和意大利的140个家庭中研究了弗里德赖希共济失调(FRDA)与四个紧密连锁的多等位基因标记之间的连锁不平衡。这些标记包括三个微卫星(D9S111、D9S15和D9S110)和一个限制性片段长度多态性(RFLP,D9S5)。它们的染色体顺序D9S111-D9S15-D9S110-D9S5先前已通过物理图谱确定。评估了每个标记与FRDA之间以及标记之间的连锁不平衡。获得了扩展单倍型,并评估了它们在FRDA和正常染色体上的频率。我们仅获得了FRDA与D9S5之间存在强等位基因关联的证据。标记之间的连锁不平衡分析显示D9S110和D9S5之间有显著下降,表明在这些标记之间的区间存在一个重组热点。可能由于这个原因,未发现与FRDA相关的主要扩展单倍型。我们的数据表明在所研究的人群中存在一些常见的致病突变,并指出了FRDA基因的一个假定定位。在这个候选区域已发现转录序列。

相似文献

1
Linkage disequilibrium analysis of Friedreich's ataxia in 140 Caucasian families: positioning of the disease locus and evaluation of allelic heterogeneity.140个高加索家庭中弗里德赖希共济失调的连锁不平衡分析:疾病基因座定位及等位基因异质性评估
Eur J Hum Genet. 1993;1(2):133-43. doi: 10.1159/000472400.
2
Additional polymorphisms at marker loci D9S5 and D9S15 generate extended haplotypes in linkage disequilibrium with Friedreich ataxia.标记位点D9S5和D9S15处的其他多态性产生了与弗里德赖希共济失调处于连锁不平衡状态的扩展单倍型。
Proc Natl Acad Sci U S A. 1990 Mar;87(5):1796-800. doi: 10.1073/pnas.87.5.1796.
3
Friedreich's disease. A linkage study in southern and central Italy.弗里德赖希共济失调症。意大利南部和中部的一项连锁研究。
Acta Neurol (Napoli). 1992 Aug-Dec;14(4-6):519-23.
4
Mapping the Friedreich ataxia locus (FRDA) by linkage disequilibrium analysis with highly polymorphic microsatellites.通过与高度多态性微卫星进行连锁不平衡分析来定位弗里德赖希共济失调基因座(FRDA)。
Biomed Pharmacother. 1994;48(5-6):219-24. doi: 10.1016/0753-3322(94)90136-8.
5
Recombinations in individuals homozygous by descent localize the Friedreich ataxia locus in a cloned 450-kb interval.纯合子个体中的重组将弗里德赖希共济失调基因座定位在一个克隆的450千碱基对区间内。
Am J Hum Genet. 1994 Jun;54(6):1050-9.
6
Friedreich ataxia in Italian families: genetic homogeneity and linkage disequilibrium with the marker loci D9S5 and D9S15.意大利家族中的弗里德赖希共济失调:与标记位点D9S5和D9S15的遗传同质性和连锁不平衡
Am J Hum Genet. 1990 Aug;47(2):228-35.
7
Identification of a hypervariable microsatellite polymorphism within D9S15 tightly linked to Friedrich's ataxia.在与弗里德赖希共济失调紧密连锁的D9S15内鉴定出一种高变微卫星多态性。
Hum Genet. 1990 Jun;85(1):98-100. doi: 10.1007/BF00276331.
8
Mapping of Friedreich's ataxia locus by identification of recombination events in patients homozygous by descent.
Eur J Hum Genet. 1994;2(4):291-9. doi: 10.1159/000472373.
9
Linkage disequilibrium between FD1-D9S202 haplotypes and the Friedreich's ataxia locus in a central-southern Italian population.意大利中南部人群中FD1-D9S202单倍型与弗里德赖希共济失调基因座之间的连锁不平衡
J Med Genet. 1994 Feb;31(2):133-5. doi: 10.1136/jmg.31.2.133.
10
Genetic recombination events which position the Friedreich ataxia locus proximal to the D9S15/D9S5 linkage group on chromosome 9q.使弗里德赖希共济失调基因座定位于9号染色体长臂上D9S15/D9S5连锁群近端的基因重组事件。
Am J Hum Genet. 1993 Jan;52(1):99-109.

引用本文的文献

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Friedreich ataxia: molecular mechanisms, redox considerations, and therapeutic opportunities.弗里德赖希共济失调:分子机制、氧化还原考虑因素和治疗机会。
Antioxid Redox Signal. 2010 Sep 1;13(5):651-90. doi: 10.1089/ars.2009.3015.
2
Evolution of the Friedreich's ataxia trinucleotide repeat expansion: founder effect and premutations.弗里德赖希共济失调三核苷酸重复序列扩增的演变:奠基者效应和前突变。
Proc Natl Acad Sci U S A. 1997 Jul 8;94(14):7452-7. doi: 10.1073/pnas.94.14.7452.
3
Toward localization of the Werner syndrome gene by linkage disequilibrium and ancestral haplotyping: lessons learned from analysis of 35 chromosome 8p11.1-21.1 markers.
通过连锁不平衡和祖先单倍型分析定位沃纳综合征基因:对35个8号染色体p11.1 - 21.1标记分析的经验教训
Am J Hum Genet. 1996 Jun;58(6):1286-302.
4
Linkage disequilibrium and extended haplotypes in the HLA-A to D6S105 region: implications for mapping the hemochromatosis gene (HFE).HLA-A至D6S105区域的连锁不平衡与扩展单倍型:对血色素沉着症基因(HFE)定位的意义
Hum Genet. 1996 Jan;97(1):103-13. doi: 10.1007/BF00218843.
5
Recombinations in individuals homozygous by descent localize the Friedreich ataxia locus in a cloned 450-kb interval.纯合子个体中的重组将弗里德赖希共济失调基因座定位在一个克隆的450千碱基对区间内。
Am J Hum Genet. 1994 Jun;54(6):1050-9.
6
Linkage disequilibrium between FD1-D9S202 haplotypes and the Friedreich's ataxia locus in a central-southern Italian population.意大利中南部人群中FD1-D9S202单倍型与弗里德赖希共济失调基因座之间的连锁不平衡
J Med Genet. 1994 Feb;31(2):133-5. doi: 10.1136/jmg.31.2.133.
7
Batten disease gene, CLN3: linkage disequilibrium mapping in the Finnish population, and analysis of European haplotypes.巴顿病基因CLN3:芬兰人群中的连锁不平衡图谱绘制及欧洲单倍型分析。
Am J Hum Genet. 1995 Mar;56(3):654-62.
8
The Friedreich ataxia critical region spans a 150-kb interval on chromosome 9q13.弗里德赖希共济失调关键区域位于9号染色体q13上一个150千碱基对的区间内。
Am J Hum Genet. 1995 Nov;57(5):1061-7.