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DNA序列中长程相关性和组成波动的定量测试。

A quantitative test of long-range correlations and compositional fluctuations in DNA sequences.

作者信息

Chatzidimitriou-Dreismann C A, Streffer R M, Larhammar D

机构信息

Iwan N. Stranski Institute, Technical University of Berlin, Germany.

出版信息

Eur J Biochem. 1994 Sep 1;224(2):365-71. doi: 10.1111/j.1432-1033.1994.00365.x.

Abstract

Recent findings concerning long-range correlations and fractals in intron-containing DNA sequences of living organisms are tested qualitatively and quantitatively. Extending previous studies, we demonstrate that these findings are trivially equivalent to variations of the base-pair composition in different regions of a DNA sequence. It is shown explicitly that a well-defined scaling or fractal exponent does not exist anywhere. Comparisons of natural DNAs with computer-generated, artificial sequences are made. The present study reveals that certain natural DNA sequences (especially those with compact genomes) do have stochastic characteristics which are intrinsically different from artificial sequences. The results for 21 DNA sequences of various types from widely different taxa are reported.

摘要

对近期有关生物体含内含子DNA序列中的长程相关性和分形的研究结果进行了定性和定量检验。在扩展先前研究的基础上,我们证明这些结果等同于DNA序列不同区域碱基对组成的变化,这一点显而易见。明确表明不存在任何明确界定的标度或分形指数。对天然DNA与计算机生成的人工序列进行了比较。本研究表明,某些天然DNA序列(尤其是那些基因组紧凑的序列)确实具有与人工序列本质上不同的随机特征。报告了来自广泛不同分类群的21种不同类型DNA序列的结果。

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