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肽结构设计中的α,β-脱氢氨基酸残基:两种同源肽-N-乙酰基-脱氢苯丙氨酸-L-亮氨酸甲酯和N-乙酰基-脱氢苯丙氨酸-去甲缬氨酸甲酯的合成、晶体结构及分子构象

alpha,beta-Dehydro-amino acid residues in the design of peptide structures: synthesis, crystal structure, and molecular conformation of two homologous peptides-N-Ac-dehydro-Phe-L-Leu-OCH3 and N-Ac-dehydro-Phe-NorVal-OCH3.

作者信息

Sharma P, Narula P, Singh T P

机构信息

Department of Biophysics, All India Institute of Medical Sciences, New Delhi.

出版信息

Biopolymers. 1994 Sep;34(9):1243-9. doi: 10.1002/bip.360340912.

DOI:10.1002/bip.360340912
PMID:7948736
Abstract

The dehydro-residue containing peptides N-Ac-dehydro-Phe-L-Leu-OCH3 (I) and N-Ac-dehydro-Phe-NorVal-OCH3 (II) were synthesized by the usual workup procedures. The peptides crystallize from their solutions in methanol in space group P6(5): (I) a = b = 12.528(2) A, c = 21.653(5) A; (II) a = b = 12.532(2) A, c = 21.695(4) A. The structures were determined by direct methods. Both peptides adopt similar conformations with phi,psi of dehydro-Phe as follows: (I) -57.0(5) degrees and -37.0(5) degrees; (II) -56.0(5), degrees, and -37.5(5) degrees. The observed data on dehydro-Phe when placed at the (i + 1) position show that the phi,psi values of dehydro-Phe are either -60 degrees, 140 degrees or -60 degrees, -30 degrees. The conformation of -60 degrees, 140 degrees can be accommodated only with a flexible residue at the (i + 2) position while the phi,psi values of -60 degrees, -30 degrees are obtained with a bulky residue at the (i + 2) position as in the present structures. The molecules are packed in a helical way along the c axis. These are held by two strong intermolecular hydrogen bonds involving both NH as donors and acetyl group and dehydro-Phe oxygen atoms as acceptors.

摘要

含有脱氢残基的肽N-乙酰基-脱氢苯丙氨酸-L-亮氨酸-OCH₃(I)和N-乙酰基-脱氢苯丙氨酸-去甲缬氨酸-OCH₃(II)通过常规后处理程序合成。这些肽从它们在甲醇中的溶液中结晶,空间群为P6(5):(I)a = b = 12.528(2) Å,c = 21.653(5) Å;(II)a = b = 12.532(2) Å,c = 21.695(4) Å。结构通过直接法确定。两种肽都具有相似的构象,脱氢苯丙氨酸的φ、ψ值如下:(I)-57.0(5)°和-37.0(5)°;(II)-56.0(5)°和-37.5(5)°。当脱氢苯丙氨酸位于(i + 1)位置时观察到的数据表明,脱氢苯丙氨酸的φ、ψ值要么是-60°,140°,要么是-60°,-30°。-60°,140°的构象只有在(i + 2)位置有一个柔性残基时才能容纳,而-60°,-30°的φ、ψ值是在(i + 2)位置有一个大体积残基时获得的,如在当前结构中。分子沿c轴以螺旋方式堆积。它们通过两个强分子间氢键相互连接,其中NH作为供体,乙酰基和脱氢苯丙氨酸的氧原子作为受体。

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