Onodera K, Sakurai M, Moriyama H, Tanaka N, Numata K, Oshima T, Sato M, Katsube Y
Department of Life Science, Faculty of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama, Japan.
Protein Eng. 1994 Apr;7(4):453-9. doi: 10.1093/protein/7.4.453.
The 3-D structures of two chimeric enzymes (4M6T and 2T2M6T) between the Bacillus subtilis and Thermus thermophilus 3-isopropylmalate dehydrogenases were analysed by X-ray diffraction in order to investigate their different thermostabilities. The structure of 2T2M6T was determined by the difference Fourier method and that of 4M6T by rigid body refinement, as based on the structure of the T. thermophilus enzyme. These structures were refined stereochemically to an R-factor of 0.193 at 2.5 A resolution for 4M6T and to an R-factor of 0.195 at 2.2 A resolution for 2T2M6T. The 3-D structures of 4M6T and 2T2M6T were very close to the structure of the T. thermophilus enzyme, conspicuous differences being at the molecular surface. In particular, 2T2M6T having a larger reduction in thermostability was more closely related to the T. thermophilus enzyme. However, their correlations between C alpha-atom displacements and the root squares of the temperature factors were significantly different from each other.
为了研究两种嵌合酶(4M6T和2T2M6T)的不同热稳定性,通过X射线衍射分析了枯草芽孢杆菌和嗜热栖热菌3-异丙基苹果酸脱氢酶之间的三维结构。2T2M6T的结构通过差值傅里叶法确定,4M6T的结构基于嗜热栖热菌酶的结构通过刚体精修确定。这些结构经过立体化学精修,4M6T在2.5 Å分辨率下的R因子为0.193,2T2M6T在2.2 Å分辨率下的R因子为0.195。4M6T和2T2M6T的三维结构与嗜热栖热菌酶的结构非常接近,明显的差异在分子表面。特别是,热稳定性降低幅度较大的2T2M6T与嗜热栖热菌酶的关系更为密切。然而,它们的Cα原子位移与温度因子平方根之间的相关性彼此显著不同。