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IS117(天蓝色链霉菌A3(2)的2.5 kb“小环”)的转座:开放阅读框的作用及串联插入的起源

Transposition of IS117, the 2.5 kb Streptomyces coelicolor A3(2) 'minicircle': roles of open reading frames and origin of tandem insertions.

作者信息

Smokvina T, Henderson D J, Melton R E, Brolle D F, Kieser T, Hopwood D A

机构信息

John Innes Institute, John Innes Centre, Norwich, UK.

出版信息

Mol Microbiol. 1994 May;12(3):459-68. doi: 10.1111/j.1365-2958.1994.tb01034.x.

Abstract

IS117 is a 2527 bp transposable element from Streptomyces coelicolor A3(2) with a circular transposition intermediate. Disruption of ORF1 of IS117, presumed to encode a transposase, abolished transposition. Deletion or mutation of ORF2 and ORF3, which overlap each other on opposite strands of IS117, caused a c. 20-fold reduction in integration frequency of the circular form of IS117 into the Streptomyces lividans chromosome or into the preferred chromosomal target site cloned on a plasmid in transformation experiments. In contrast, inactivation of ORF2/3 did not significantly influence transposition of IS117 derivatives from an already integrated state in the chromosome to the preferred target site cloned on a plasmid. ORF2 mutants apparently excised readily from the S. lividans chromosome, whereas excision of integrated wild-type IS117 derivatives to yield the unoccupied site was not detected; presumably, therefore, the circular transposition intermediate normally arises replicatively. Attempts to promote integration of a plasmid carrying the attachment site of IS117 by providing the ORF1 product in trans were unsuccessful. Most transformation of S. lividans with circular IS117 derivatives yielded tandem chromosomal insertions, which arose by co-transformation rather than dimerization of a monomeric insert. Typically, two to three transforming elements gave a transformed strain, suggesting a local concentration of transposase as a limit on integration.

摘要

IS117是来自天蓝色链霉菌A3(2)的一个2527 bp的转座元件,具有环状转座中间体。IS117的假定编码转座酶的ORF1被破坏后,转座作用消失。在IS117相反链上相互重叠的ORF2和ORF3的缺失或突变,导致在转化实验中,IS117环状形式整合到淡青链霉菌染色体或克隆在质粒上的首选染色体靶位点的频率降低约20倍。相比之下,ORF2/3的失活对IS117衍生物从染色体上已整合状态转座到克隆在质粒上的首选靶位点没有显著影响。ORF2突变体显然很容易从淡青链霉菌染色体上切除,而未检测到整合的野生型IS117衍生物切除后产生空位;因此推测,环状转座中间体通常通过复制产生。通过反式提供ORF1产物来促进携带IS117附着位点的质粒整合的尝试未成功。用环状IS117衍生物对淡青链霉菌进行的大多数转化产生了串联染色体插入,这是通过共转化而非单体插入的二聚化产生的。通常,两到三个转化元件产生一个转化菌株,这表明转座酶的局部浓度是整合的一个限制因素。

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