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细胞器中蛋白质邻域的化学测定

Chemical determination of protein neighbourhoods in a cellular organelle.

作者信息

Lutter L C, Kurland C G

出版信息

Mol Cell Biochem. 1975 May 30;7(2):105-16. doi: 10.1007/BF01792077.

DOI:10.1007/BF01792077
PMID:806784
Abstract

Experimental procedures developed for the identification of near-neighboring proteins in a complicated organelle are described in this paper. The specific system studied here is the ribosome of Escherichia coli; however, the techniques and reagents described should have a wide range of applications. We have used three kinds of cross-linking agents: noncleavable maleimide reagents which react with free SH groups; noncleavable diimidoesters which react with free amino groups, and cleavable diazide agents that also react with free amino groups. The combination of immunological and isotopic labelling techniques used to identify proteins cross-linked by noncleavable reagents, as well as the special electrophoretic techniques used with the cleavable reagents are described. We show that the neighborhoods detected by the crosslink technology are functionally meaningful ones, and also discuss the ambiguities inherent in the structural interpretation of such protein neighborhoods.

摘要

本文描述了用于鉴定复杂细胞器中近邻蛋白质的实验程序。这里研究的特定系统是大肠杆菌核糖体;然而,所描述的技术和试剂应该有广泛的应用。我们使用了三种交联剂:与游离SH基团反应的不可裂解马来酰亚胺试剂;与游离氨基反应的不可裂解二亚胺酯,以及也与游离氨基反应的可裂解二叠氮试剂。描述了用于鉴定由不可裂解试剂交联的蛋白质的免疫和同位素标记技术的组合,以及与可裂解试剂一起使用的特殊电泳技术。我们表明,通过交联技术检测到的邻域具有功能意义,并讨论了此类蛋白质邻域结构解释中固有的模糊性。

相似文献

1
Chemical determination of protein neighbourhoods in a cellular organelle.细胞器中蛋白质邻域的化学测定
Mol Cell Biochem. 1975 May 30;7(2):105-16. doi: 10.1007/BF01792077.
2
Identification of neighbouring proteins in the 30 S ribosomes of E. coli.大肠杆菌30 S核糖体中相邻蛋白质的鉴定。
FEBS Lett. 1975 Feb 1;50(2):114-20. doi: 10.1016/0014-5793(75)80469-8.
3
The use of a cleavable crosslinking reagent to identify neighboring proteins in the 30-S ribosomal subunit of Escherichia coli.使用可裂解交联试剂鉴定大肠杆菌30S核糖体亚基中的相邻蛋白质。
Eur J Biochem. 1976 Mar 16;63(1):83-92. doi: 10.1111/j.1432-1033.1976.tb10210.x.
4
Chemical basis for heterogeneity of ribosomal proteins.核糖体蛋白异质性的化学基础。
Proc Natl Acad Sci U S A. 1968 Apr;59(4):1329-36. doi: 10.1073/pnas.59.4.1329.
5
Identification by diagonal gel electrophoresis of nine neighboring protein pairs in the Escherichia coli 30 S ribosome crosslinked with methyl-4-mercaptobutyrimidate.通过对角线凝胶电泳鉴定与甲基-4-巯基丁酸亚胺交联的大肠杆菌30S核糖体中的九对相邻蛋白质对。
J Mol Biol. 1975 Oct 5;97(4):471-81. doi: 10.1016/s0022-2836(75)80054-4.
6
Effects of aminoethylation of cysteine residues on the structural and functional activities of the Escherichia coli 30 S ribosomal proteins.半胱氨酸残基氨乙基化对大肠杆菌30S核糖体蛋白结构和功能活性的影响。
J Mol Biol. 1974 Oct 5;88(4):797-808. doi: 10.1016/0022-2836(74)90400-8.
7
Methyl 4-mercaptobutyrimidate as a cleavable cross-linking reagent and its application to the Escherichia coli 30S ribosome.4-巯基丁酸甲酯作为一种可裂解交联剂及其在大肠杆菌30S核糖体中的应用。
Biochemistry. 1973 Aug 14;12(17):3266-73. doi: 10.1021/bi00741a019.
8
Topography of ribosomal proteins of the Escherichia coli 30S subunit as studied with the reversible cross-linking reagent methyl 4-mercaptobutyrimidate.使用可逆交联试剂4-巯基丁酸甲酯研究大肠杆菌30S亚基核糖体蛋白的拓扑结构。
Biochemistry. 1974 May 21;13(11):2334-40. doi: 10.1021/bi00708a015.
9
Extraction and isolation of individual ribosomal proteins from Escherichia coli.从大肠杆菌中提取和分离单个核糖体蛋白。
J Bacteriol. 1968 Aug;96(2):358-64. doi: 10.1128/jb.96.2.358-364.1968.
10
Protein-protein proximity in the association of ribosomal subunits of Escherichia coli: crosslinking of 30 S protein S16 to 50 S proteins by glutaraldehyde or formaldehyde.大肠杆菌核糖体亚基结合过程中的蛋白质-蛋白质接近度:戊二醛或甲醛使30S核糖体蛋白S16与50S核糖体蛋白交联
J Mol Biol. 1974 Aug 15;87(3):509-22. doi: 10.1016/0022-2836(74)90101-6.

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Chemical cross-linking with mass spectrometry: a tool for systems structural biology.化学交联与质谱联用:系统结构生物学的研究工具。
Curr Opin Chem Biol. 2019 Feb;48:8-18. doi: 10.1016/j.cbpa.2018.08.006. Epub 2018 Aug 30.
2
Probing the conformation of the ISWI ATPase domain with genetically encoded photoreactive crosslinkers and mass spectrometry.利用遗传编码光反应交联剂和质谱法探测 ISWI ATP 酶结构域的构象。
Mol Cell Proteomics. 2012 Apr;11(4):M111.012088. doi: 10.1074/mcp.M111.012088. Epub 2011 Dec 13.
3
Mass spectrometric detection of affinity purified crosslinked peptides.

本文引用的文献

1
Reconstitution of active ribosomes with cross-linked proteins.用交联蛋白重建活性核糖体。
Nat New Biol. 1973 May 2;243(122):15-7.
2
The requirements for specific sRNA binding by ribosomes.核糖体对特定小RNA(sRNA)结合的要求。
J Mol Biol. 1966 Jun;18(1):90-108. doi: 10.1016/s0022-2836(66)80079-7.
3
Intermolecular cross-linking of monomeric proteins and cross-linking of oligomeric proteins as a probe of quaternary structure. Application to leucine aminopeptidase (bovine lens).单体蛋白质的分子间交联和寡聚蛋白质的交联作为四级结构的探针。应用于亮氨酸氨肽酶(牛晶状体)。
亲和纯化交联肽段的质谱检测
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4
Mining biochemical information: lessons taught by the ribosome.挖掘生化信息:核糖体带来的启示
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5
High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry.利用分子内交联和质谱法获得的实验约束进行高通量蛋白质折叠鉴定。
Proc Natl Acad Sci U S A. 2000 May 23;97(11):5802-6. doi: 10.1073/pnas.090099097.
6
Chemical crosslinking of cell membranes.细胞膜的化学交联
Mol Cell Biochem. 1983;50(2):115-41. doi: 10.1007/BF00285638.
J Biol Chem. 1972 Sep 10;247(17):5580-6.
4
Mutant ribosomal protein with defective RNA binding site.具有缺陷RNA结合位点的突变核糖体蛋白。
Nat New Biol. 1971 Dec 29;234(52):273-5. doi: 10.1038/newbio234273a0.
5
Purification and characterization of 50S ribosomal proteins of Escherichia coli.大肠杆菌50S核糖体蛋白的纯化与特性分析
Mol Gen Genet. 1971;112(3):229-42. doi: 10.1007/BF00269176.
6
Molecular interactions of ribosomal components. II. Site-specific complex formation between 30S proteins and ribosomal RNA.核糖体成分的分子相互作用。II. 30S蛋白与核糖体RNA之间的位点特异性复合物形成
Mol Gen Genet. 1971;112(1):1-8. doi: 10.1007/BF00266926.
7
Molecular interactions of ribosomal components. I. Identification of RNA binding sites for individual 30S ribosomal proteins.核糖体组分的分子相互作用。I. 单个30S核糖体蛋白的RNA结合位点鉴定。
Mol Gen Genet. 1970;109(3):193-205. doi: 10.1007/BF00267007.
8
Ribosomal proteins. XV. Amino acid compositions of isolated ribosomal proteins from 30S and 50S subunits of Escherichia coli.核糖体蛋白。十五。大肠杆菌30S和50S亚基中分离出的核糖体蛋白的氨基酸组成。
Mol Gen Genet. 1970;109(4):292-7. doi: 10.1007/BF00267698.
9
Reversion of a streptomycin-dependent strain of Escherichia coli.一株大肠杆菌链霉素依赖株的回复突变
Mol Gen Genet. 1970;109(4):356-69. doi: 10.1007/BF00267704.
10
Ribosomal proteins. XVI. Altered S4 proteins in Escherichia coli revertants from streptomycin dependence to independence.核糖体蛋白。十六。大肠杆菌中从链霉素依赖型回复到非依赖型的突变体中S4蛋白的改变
Mol Gen Genet. 1970;109(4):298-302. doi: 10.1007/BF00267699.