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小鼠12号染色体DNA标记图谱的优化

Refinement of the DNA marker maps of mouse chromosome 12.

作者信息

Khan F, Clarke V, D'Eustachio P

机构信息

Department of Biochemistry, New York University Medical Center, New York 10016.

出版信息

Genomics. 1994 May 1;21(1):128-37. doi: 10.1006/geno.1994.1234.

Abstract

To refine the linkage map of mouse Chromosome (Chr) 12 and to define better the homology relationships between it and human chrs 2p and 14q, nine new anonymous DNA markers of Chr 12 were identified, and mouse loci homologous to the human D14S17, CHGA, HSPA2, RRM2, TPO, and ZFP50 ("KUP") genes were defined. The inheritance of DNA variants associated with these markers was followed in progeny of a reciprocal backcross between the C57BL/6J and SWR/J laboratory mouse strains and in recombinant inbred (RI) strains of mice. These data, combined with results of previous analyses of the backcross, allowed the construction of a 22-marker multilocus linkage map that spanned 58 cM. Use of this map to anchor the RI typing data collected in this and previous studies allowed the construction of a 79-marker map that spanned 66 cM and the identification of a framework of unambiguously ordered, extensively typed markers that should facilitate the use of RI mice in testing new markers for possible linkage to Chr 12.

摘要

为了完善小鼠第12号染色体(Chr)的连锁图谱,并更好地确定它与人类2号染色体短臂(Chr 2p)和14号染色体长臂(Chr 14q)之间的同源关系,我们鉴定了9个新的小鼠第12号染色体匿名DNA标记,并确定了与人类D14S17、CHGA、HSPA2、RRM2、TPO和ZFP50(“KUP”)基因同源的小鼠基因座。在C57BL/6J和SWR/J实验室小鼠品系之间的正反交回交后代以及重组近交(RI)小鼠品系中,追踪了与这些标记相关的DNA变异的遗传情况。这些数据与之前回交分析的结果相结合,构建了一个包含22个标记的多位点连锁图谱,跨度为58厘摩(cM)。利用该图谱来定位本次研究及之前研究中收集的RI分型数据,构建了一个包含79个标记、跨度为66 cM的图谱,并确定了一个明确排序、广泛分型的标记框架,这将有助于利用RI小鼠来检测与第12号染色体可能连锁的新标记。

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