Harata K, Muraki M, Jigami Y
Biomolecules Department, National Institute of Bioscience and Human-Technology, Ibaraki, Japan.
J Mol Biol. 1993 Oct 5;233(3):524-35. doi: 10.1006/jmbi.1993.1529.
The structure of modified human lysozymes (HLs), in which Arg115 is replaced by His or Glu, has been investigated by X-ray analysis at 1.77 A resolution. The mutation of the 115th residue by His does not affect the backbone structure as indicated by a root-mean-square deviation (r.m.s.d) of 0.14 A for the superposition of equivalent C alpha atoms between His115 HL and wild-type HL. In contrast, the corresponding r.m.s.d. value for Glu115 HL is 0.38 A which is twice as large as the estimated co-ordinate error of 0.2 A. Movement of the backbone structure is observed in the region of residues 100 to 130, which give an r.m.s.d. value of 0.61 A and a maximum deviation of 1.46 A for Arg119. A significant movement is also observed in the region of residues 45 to 50, which are located at the opposite side of the region of residues 100 to 120 with respect to the active site cleft. As a result, the active site cleft of Glu115 HL is narrower than the cleft of His115 HL or wild-type HL. This structural change is considered to be responsible for the low catalytic activity of Glu115 HL and the change of the catalytic property found in the hydrolysis of oligosaccharides. The replacement of Arg115 by Glu changes the charge distribution in the molecule, and the change in the electrostatic field may affect polar interactions among residues. The side-chain group of His115 and Glu115 is almost parallel to the indole moiety of Trp34, but the carboxyl group of Glu115 is laterally shifted to avoid overlapping with the indole moiety. The carboxylate anion of Glu115, which does not favor the face-to-face contact with aromatic groups, may provide a driving force for the structural change. The prominent structural change caused by the single mutation suggests that Arg115 is a key residue in maintaining the structure of the active site cleft.
已通过分辨率为1.77 Å的X射线分析研究了将精氨酸115替换为组氨酸或谷氨酸的修饰型人溶菌酶(HLs)的结构。组氨酸对第115位残基的突变不影响主链结构,组氨酸115 HL与野生型HL之间等效Cα原子叠加的均方根偏差(r.m.s.d)为0.14 Å表明了这一点。相比之下,谷氨酸115 HL的相应r.m.s.d值为0.38 Å,是估计坐标误差0.2 Å的两倍。在残基100至130区域观察到主链结构的移动,精氨酸119的r.m.s.d值为0.61 Å,最大偏差为1.46 Å。在残基45至50区域也观察到显著移动,该区域相对于活性位点裂隙位于残基100至120区域的另一侧。结果,谷氨酸115 HL的活性位点裂隙比组氨酸115 HL或野生型HL的裂隙更窄。这种结构变化被认为是谷氨酸115 HL催化活性低以及在寡糖水解中发现的催化性质变化的原因。精氨酸115被谷氨酸替代改变了分子中的电荷分布,静电场的变化可能影响残基之间的极性相互作用。组氨酸115和谷氨酸115的侧链基团几乎与色氨酸34的吲哚部分平行,但谷氨酸115的羧基侧向移位以避免与吲哚部分重叠。不倾向于与芳香基团进行面对面接触的谷氨酸115的羧酸根阴离子可能为结构变化提供驱动力。由单一突变引起的显著结构变化表明精氨酸115是维持活性位点裂隙结构的关键残基。