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富含AT的侧翼区域在GC盒结合锌指蛋白MIG1识别靶位点中的重要性。

Importance of a flanking AT-rich region in target site recognition by the GC box-binding zinc finger protein MIG1.

作者信息

Lundin M, Nehlin J O, Ronne H

机构信息

Ludwig Institute for Cancer Research, Uppsala Biomedical Center, Sweden.

出版信息

Mol Cell Biol. 1994 Mar;14(3):1979-85. doi: 10.1128/mcb.14.3.1979-1985.1994.

Abstract

MIG1 is a zinc finger protein that mediates glucose repression in the yeast Saccharomyces cerevisiae. MIG1 is related to the mammalian Krox/Egr, Wilms' tumor, and Sp1 finger proteins. It has two fingers and binds to a GCGGGG motif that resembles the GC boxes recognized by these mammalian proteins. We have performed a complete saturation mutagenesis of a natural MIG1 site in order to elucidate its binding specificity. We found that only three mutations within the GC box retain the ability to bind MIG1: G1 to C, C2 to T, and G5 to A. This result is consistent with current models for zinc finger-DNA binding, which assume that the sequence specificity is determined by base triplet recognition within the GC box. Surprisingly, we found that an AT-rich region 5' to the GC box also is important for MIG1 binding. This AT box is present in all natural MIG1 sites, and it is protected by MIG1 in DNase I footprints. However, the AT box differs from the GC box in that no single base within it is essential for binding. Instead, the AT-rich nature of this sequence seems to be crucial. The fact that AT-rich sequences are known to increase DNA flexibility prompted us to test whether MIG1 bends DNA. We found that binding of MIG1 is associated with bending within the AT box. We conclude that DNA binding by a simple zinc finger protein such as MIG1 can involve both recognition of the GC box and flanking sequence preferences that may reflect local DNA bendability.

摘要

MIG1是一种锌指蛋白,可介导酿酒酵母中的葡萄糖抑制作用。MIG1与哺乳动物的Krox/Egr、威尔姆斯瘤和Sp1指蛋白相关。它有两个锌指,并与一个GCGGGG基序结合,该基序类似于这些哺乳动物蛋白识别的GC盒。为了阐明其结合特异性,我们对一个天然MIG1位点进行了完全饱和诱变。我们发现,GC盒内只有三个突变保留了与MIG1结合的能力:G1突变为C、C2突变为T以及G5突变为A。这一结果与当前锌指-DNA结合模型一致,该模型假定序列特异性由GC盒内的碱基三联体识别决定。令人惊讶的是,我们发现GC盒5'端的富含AT的区域对MIG1结合也很重要。这个AT盒存在于所有天然MIG1位点中,并且在DNase I足迹实验中受到MIG1的保护。然而,AT盒与GC盒的不同之处在于,其中没有单个碱基对结合至关重要。相反,该序列的富含AT的性质似乎至关重要。已知富含AT的序列会增加DNA的柔韧性,这促使我们测试MIG1是否会使DNA弯曲。我们发现MIG1的结合与AT盒内的弯曲有关。我们得出结论,像MIG1这样的简单锌指蛋白与DNA的结合可能既涉及对GC盒的识别,也涉及侧翼序列偏好,这可能反映了局部DNA的可弯曲性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ee8/358557/b0d9e723fae7/molcellb00003-0463-a.jpg

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