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人纤连蛋白第十种III型细胞黏附模块的晶体结构。

Crystal structure of the tenth type III cell adhesion module of human fibronectin.

作者信息

Dickinson C D, Veerapandian B, Dai X P, Hamlin R C, Xuong N H, Ruoslahti E, Ely K R

机构信息

Cancer Research Center, La Jolla Cancer Research Foundation, CA 92037.

出版信息

J Mol Biol. 1994 Mar 4;236(4):1079-92. doi: 10.1016/0022-2836(94)90013-2.

Abstract

The crystal structure of the cell adhesion module of fibronectin (FNIII10) has been determined at 1.8 A resolution. A recombinant fragment corresponding to the tenth type III module of human fibronectin was crystallized in space group P2(1) with a = 30.7, b = 35.1 and c = 37.7 A and beta = 107 degrees. The structure was determined by molecular replacement and refined by least squares methods. The crystallographic R-factor for the final model of the 91 amino acid module plus 56 solvent atoms is 0.18 for 10 to 1.8 A data. The module consists of two layers of beta-sheet, one with three antiparallel strands and the other with four antiparallel strands. The beta-sheets enclose a hydrophobic core of 24 amino acid side-chains. The module contains the RGD cell recognition sequence in a flexible loop connecting two beta-strands. The tertiary structure of the FNIII10 module has been used to develop a structure-based sequence alignment of 17 type III modules in fibronectin based on the striking conservation of homologous hydrophobic residues. A similar pattern of homologous alternating hydrophobic residues is also evident in a comparison of type III modules in proteins unrelated to fibronectin such as cytokine receptors and muscle proteins.

摘要

纤连蛋白细胞黏附模块(FNIII10)的晶体结构已在1.8埃分辨率下测定。对应于人纤连蛋白第十个III型模块的重组片段在空间群P2(1)中结晶,a = 30.7埃,b = 35.1埃,c = 37.7埃,β = 107°。该结构通过分子置换法确定,并通过最小二乘法进行精修。对于91个氨基酸模块加56个溶剂原子的最终模型,10至1.8埃数据的晶体学R因子为0.18。该模块由两层β折叠组成,一层有三条反平行链,另一层有四条反平行链。β折叠包围着一个由24个氨基酸侧链组成的疏水核心。该模块在连接两条β链的柔性环中包含RGD细胞识别序列。基于同源疏水残基的显著保守性,FNIII10模块的三级结构已被用于开发纤连蛋白中17个III型模块的基于结构的序列比对。在与纤连蛋白无关的蛋白质(如细胞因子受体和肌肉蛋白)中的III型模块比较中,也明显存在类似的同源交替疏水残基模式。

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