Soda K
Department of Bioengineering, Nagaoka University of Technology, Niigata, Japan.
Adv Biophys. 1993;29:1-54. doi: 10.1016/0065-227x(93)90004-o.
From analyses of the solvation structure around HS solutes for HS solvents and various water models by the RISM integral equation method, the following conclusions are drawn: 1) Water has more small cavities than HS solvents, which makes it easier for water to accommodate small solutes with a radius less than about 1A. 2) With increasing solute radius from 0 to 3A, the average orientation of hydrating water varies from an inward to an outward orientation, which shows that some reorganization of water occurs in response to the change in solute size. 3) The hydration structure is formed as a network structure due to H-bonding interactions between water molecules being supported by the cooperation of repulsive forces between solute and water. Repulsive interactions of not only O atoms but also H atoms with solute are essential to the formation of such hydration structure. With regard to the physical mechanism of the hydrophobic effect, the following is concluded from an analysis of the physical meaning of the basic formula for the free energy of cavity formation: 4) It is predicted from the scaled particle theory that the solvent exclusion effect caused by the introduction of solute into solvent is an important factor of the hydrophobic effect. 5) The large negative transfer entropy at room temperature characteristic of the hydrophobic hydration results primarily from the decrease in the configuration entropy of water due to the solvent exclusion effect. 6) The structuralization of hydrating water results in exactly compensating changes in enthalpy and entropy, and a large positive change in heat capacity. As a result, the hydrophobic effect is dominated by the entropy effect at room temperature, while it is driven by enthalpy at temperatures higher than 110 degrees C. 7) Hydrating water is energetically similar to bulk water, and the term "highly structured" is not appropriate to describe it. The following descriptions can be made on estimating the free energy of transfer of biomolecules from gas or organic-liquid phase to water: 8) Derivation of the basic formula for the transfer free energy of solute with variable conformation was presented and physical meanings of the contributions to it were explained. 9) Applying the formula to the transfer of 40 organic molecules from gas phase to water, the two best models for diving all the constituent atoms into several hydration-thermodynamically independent groups and the atomic hydration parameters of respective groups were determined.(ABSTRACT TRUNCATED AT 400 WORDS)
通过RISM积分方程方法对用于HS溶剂和各种水模型的HS溶质周围的溶剂化结构进行分析,得出以下结论:1)水比HS溶剂具有更多的小空腔,这使得水更容易容纳半径小于约1埃的小溶质。2)随着溶质半径从0增加到3埃,水合水的平均取向从向内变为向外,这表明水会因溶质大小的变化而发生一些重组。3)由于溶质与水之间的排斥力的协同作用,水分子之间通过氢键相互作用形成了水合结构,成为一种网络结构。不仅氧原子,而且氢原子与溶质的排斥相互作用对于这种水合结构的形成都是必不可少的。关于疏水效应的物理机制,通过对空穴形成自由能基本公式的物理意义分析得出以下结论:4)根据标度粒子理论预测,溶质引入溶剂引起的溶剂排斥效应是疏水效应的一个重要因素。5)疏水水合在室温下的大的负转移熵主要源于溶剂排斥效应导致的水的构型熵的降低。6)水合水的结构化导致焓和熵的变化恰好相互补偿,以及热容的大的正变化。结果,疏水效应在室温下由熵效应主导,而在高于110摄氏度的温度下由焓驱动。7)水合水在能量上与本体水相似,“高度结构化”一词不适用于描述它。关于估计生物分子从气相或有机液相转移到水相的自由能,可以得出以下描述:8)给出了具有可变构象的溶质转移自由能基本公式的推导,并解释了其贡献的物理意义。9)将该公式应用于40个有机分子从气相到水相的转移,确定了将所有组成原子划分为几个水合热力学独立组的两个最佳模型以及各个组的原子水合参数。(摘要截断于400字)