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多溶剂模型用于使用 3D-RISM 水合热力学描述符预测溶剂化自由能。

Multisolvent Models for Solvation Free Energy Predictions Using 3D-RISM Hydration Thermodynamic Descriptors.

机构信息

Drug Metabolism and Pharmacokinetics, Research and Early Development-Respiratory, Inflammation and Autoimmune, Biopharmaceuticals R&D, AstraZeneca, Pepparedsleden 1, SE-431 83, Mölndal, Sweden.

Department of Pure and Applied Chemistry, University of Strathclyde, Thomas Graham Building, 295 Cathedral Street, Glasgow, Scotland G1 1XL, U.K.

出版信息

J Chem Inf Model. 2020 Jun 22;60(6):2977-2988. doi: 10.1021/acs.jcim.0c00065. Epub 2020 Apr 30.

Abstract

The potential to predict solvation free energies (SFEs) in any solvent using a machine learning (ML) model based on thermodynamic output, extracted exclusively from 3D-RISM simulations in water is investigated. The models on multiple solvents take into account both the solute and solvent description and offer the possibility to predict SFEs of any solute in any solvent with root mean squared errors less than 1 kcal/mol. Validations that involve exclusion of fractions or clusters of the solutes or solvents exemplify the model's capability to predict SFEs of novel solutes and solvents with diverse chemical profiles. In addition to being predictive, our models can identify the solute and solvent features that influence SFE predictions. Furthermore, using 3D-RISM hydration thermodynamic output to predict SFEs in any organic solvent reduces the need to run 3D-RISM simulations in all these solvents. Altogether, our multisolvent models for SFE predictions that take advantage of the solvation effects are expected to have an impact in the property prediction space.

摘要

利用基于热力学输出的机器学习 (ML) 模型,仅从水中的 3D-RISM 模拟中提取信息,来预测在任何溶剂中的溶剂化自由能 (SFE) 的潜力。针对多种溶剂的模型考虑了溶质和溶剂的描述,并提供了在均方根误差小于 1 kcal/mol 的情况下预测任何溶质在任何溶剂中的 SFE 的可能性。涉及排除溶质或溶剂的部分或簇的验证示例说明了该模型预测具有不同化学特征的新型溶质和溶剂的 SFE 的能力。除了具有预测性外,我们的模型还可以识别影响 SFE 预测的溶质和溶剂特征。此外,使用 3D-RISM 水合热力学输出来预测任何有机溶剂中的 SFE,可以减少在所有这些溶剂中运行 3D-RISM 模拟的需求。总之,我们的多溶剂 SFE 预测模型利用溶剂化效应,有望在属性预测领域产生影响。

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