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一种强效甜味蛋白的两种晶体结构。分辨率为2.75埃的天然莫内林和分辨率为1.7埃的单链莫内林。

Two crystal structures of a potently sweet protein. Natural monellin at 2.75 A resolution and single-chain monellin at 1.7 A resolution.

作者信息

Somoza J R, Jiang F, Tong L, Kang C H, Cho J M, Kim S H

机构信息

Graduate Group in Biophysics, University of California at Berkeley 94720.

出版信息

J Mol Biol. 1993 Nov 20;234(2):390-404. doi: 10.1006/jmbi.1993.1594.

Abstract

Two refined structures of the sweet-tasting protein monellin are presented. The structure of natural monellin has been refined at 2.75 A resolution. The final model consists of four monellin molecules in the asymmetric unit, encompassing 3136 non-hydrogen atoms. The crystallographic R-factor is 0.193 for the 8853 reflections between 6.0 A and 2.75 A resolution, and the root-mean-square deviations from ideality are 0.017 A for bond lengths and 3.6 degrees for bond angles. The refined structure generally confirms, with some difference in detail, the initial backbone model of monellin that was based on 3.0 A resolution data. Single-chain monellin (scm) was genetically engineered by fusing the two chains of monellin into a single 94-residue polypeptide. Using the refined monellin coordinates as a search model, the crystal structure of scm has been solved with the techniques of molecular replacement, and has been refined against data to 1.7 A resolution. The final model consists of two scm molecules per asymmetric unit, and includes 137 bound water molecules. The crystallographic R-factor for this model is 0.174 for the 15,053 reflections (magnitude of FO magnitude of > 2 sigma (FO)) between 6.0 A and 1.7 A resolution. The root-mean-square deviations from ideal bond lengths and angles are 0.015 A and 2.86 degrees, respectively, and the average coordinate error is approximately 0.2 A, as estimated from a Luzzati plot. The error in the model was also estimated by comparing the two molecules in the asymmetric unit. The most significant differences between the two molecules occur in loop regions and at the C terminus of the protein, and are generally correlated to differences in crystal packing contacts. Linking the two chains of monellin has not substantially altered the structure beyond the region immediately surrounding the new peptide bond. Like natural monellin, the conformation of scm is dominated by a 17-residue alpha-helix folded into the concave side of a twisted, five-strand anti-parallel beta-sheet. We expect that the availability of a high-resolution structure of scm, along with the convenience of producing site-specific mutants of this protein, will make scm a good model with which to probe the structural basis of sweetness.

摘要

本文给出了甜味蛋白莫内林的两种精制结构。天然莫内林的结构已在2.75 Å分辨率下进行了精制。最终模型在不对称单元中包含四个莫内林分子,共有3136个非氢原子。对于分辨率在6.0 Å至2.75 Å之间的8853个反射,晶体学R因子为0.193,键长与理想值的均方根偏差为0.017 Å,键角偏差为3.6°。精制结构总体上证实了基于3.0 Å分辨率数据的莫内林初始主链模型,不过在细节上存在一些差异。通过将莫内林的两条链融合成一条94个残基的多肽,对单链莫内林(scm)进行了基因工程改造。以精制的莫内林坐标作为搜索模型,采用分子置换技术解析了scm的晶体结构,并针对分辨率为1.7 Å的数据进行了精制。最终模型在每个不对称单元中包含两个scm分子,还包括137个结合水分子。对于分辨率在6.0 Å至1.7 Å之间的15053个反射(|F₀| > 2σ(|F₀|)),该模型的晶体学R因子为0.174。键长和键角与理想值的均方根偏差分别为0.015 Å和2.86°,根据卢扎蒂图估计,平均坐标误差约为0.2 Å。还通过比较不对称单元中的两个分子来估计模型中的误差。两个分子之间最显著的差异出现在环区和蛋白质的C末端,并且通常与晶体堆积接触的差异相关。连接莫内林的两条链除了紧邻新肽键的区域外,并没有显著改变其结构。与天然莫内林一样,scm的构象主要由一个17个残基的α螺旋主导,该螺旋折叠在一个扭曲的五链反平行β折叠的凹面一侧。我们预计,scm高分辨率结构的可得性,以及生产该蛋白位点特异性突变体的便利性,将使scm成为探究甜味结构基础的良好模型。

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