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利用密码子偏好性分离和鉴定六个卡氏肺孢子虫基因。

Isolation and identification of six Pneumocystis carinii genes utilizing codon bias.

作者信息

Fletcher L D, Berger L C, Peel S A, Baric R S, Tidwell R R, Dykstra C C

机构信息

Department of Pathology, School of Medicine, University of North Carolina, Chapel Hill 27599.

出版信息

Gene. 1993 Jul 30;129(2):167-74. doi: 10.1016/0378-1119(93)90265-5.

DOI:10.1016/0378-1119(93)90265-5
PMID:8325503
Abstract

Pneumocystis carinii pneumonia (PCP) is a leading cause of death among AIDS patients in the United States. Our analysis of P. carinii protein-coding genes has revealed a significant A + T codon bias. Polymerase chain reaction (PCR) was utilized to isolate and identify the genes encoding calmodulin, beta-tubulin, DNA polymerase II, and RNA polymerases I, II and III from P. carinii. Primer pairs were designed to incorporate P. carinii codon preference to known conserved protein regions from other organisms. This strategy should be useful for a large variety of P. carinii genes and assist in the comprehensive analysis of the genomic structure of this important pathogen.

摘要

卡氏肺孢子虫肺炎(PCP)是美国艾滋病患者的主要死因。我们对卡氏肺孢子虫蛋白质编码基因的分析显示出明显的A + T密码子偏好。利用聚合酶链反应(PCR)从卡氏肺孢子虫中分离并鉴定编码钙调蛋白、β-微管蛋白、DNA聚合酶II以及RNA聚合酶I、II和III的基因。设计引物对,使其结合卡氏肺孢子虫密码子偏好与来自其他生物的已知保守蛋白质区域。该策略对于大量卡氏肺孢子虫基因应是有用的,并有助于对这种重要病原体的基因组结构进行全面分析。

相似文献

1
Isolation and identification of six Pneumocystis carinii genes utilizing codon bias.利用密码子偏好性分离和鉴定六个卡氏肺孢子虫基因。
Gene. 1993 Jul 30;129(2):167-74. doi: 10.1016/0378-1119(93)90265-5.
2
Cloning and characterization of the calmodulin-encoding gene from Pneumocystis carinii.
Gene. 1993 Jul 30;129(2):307-8. doi: 10.1016/0378-1119(93)90285-b.
3
Cloning and sequence of a beta-tubulin cDNA from Pneumocystis carinii: possible implications for drug therapy.
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The beta-tubulin gene from rat and human isolates of Pneumocystis carinii.
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Characterization of the beta-tubulin gene of Pneumocystis carinii.卡氏肺孢子虫β-微管蛋白基因的特征分析
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Cloning and characterization of an alpha-tubulin-encoding gene from rat-derived Pneumocystis carinii.大鼠源性卡氏肺孢子虫α-微管蛋白编码基因的克隆与鉴定
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Molecular genetic distinction of Pneumocystis carinii from rats and humans.大鼠和人类卡氏肺孢子虫的分子遗传学鉴别
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Identification of porcine Pneumocystis carinii as a genetically distinct organism by DNA amplification.通过DNA扩增鉴定猪卡氏肺孢子虫为一种基因独特的生物体。
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J Infect Dis. 1995 Dec;172(6):1623-6. doi: 10.1093/infdis/172.6.1623.
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引用本文的文献

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Molecular characterization of recombinant Pneumocystis carinii topoisomerase I: differential interactions with human topoisomerase I poisons and pentamidine.重组卡氏肺孢子虫拓扑异构酶I的分子特征:与人类拓扑异构酶I毒素及喷他脒的差异相互作用
Antimicrob Agents Chemother. 2002 Jul;46(7):2145-54. doi: 10.1128/AAC.46.7.2145-2154.2002.
2
Identification, characterization, and expression of the BiP endoplasmic reticulum resident chaperonins in Pneumocystis carinii.卡氏肺孢子虫中BiP内质网驻留伴侣蛋白的鉴定、表征及表达
Infect Immun. 1996 Nov;64(11):4463-71. doi: 10.1128/iai.64.11.4463-4471.1996.
3
Comparison of six different PCR methods for detection of Pneumocystis carinii.
六种不同聚合酶链反应方法检测卡氏肺孢子虫的比较
J Clin Microbiol. 1995 Oct;33(10):2785-8. doi: 10.1128/jcm.33.10.2785-2788.1995.
4
Structure, expression and phylogenetic analysis of the gene encoding actin I in Pneumocystis carinii.卡氏肺孢子虫肌动蛋白I编码基因的结构、表达及系统发育分析
Genetics. 1994 Jul;137(3):743-50. doi: 10.1093/genetics/137.3.743.
5
Molecular characterization of clustered variants of genes encoding major surface antigens of human Pneumocystis carinii.编码人卡氏肺孢子虫主要表面抗原的基因簇变体的分子特征分析。
Infect Immun. 1994 Aug;62(8):3092-101. doi: 10.1128/iai.62.8.3092-3101.1994.