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大肠杆菌5-烯醇丙酮酸莽草酸-3-磷酸合酶逆反应的稳态动力学评估。

Steady-state kinetic evaluation of the reverse reaction for Escherichia coli 5-enolpyruvoylshikimate-3-phosphate synthase.

作者信息

Gruys K J, Marzabadi M R, Pansegrau P D, Sikorski J A

机构信息

New Products Division, Agricultural Group of Monsanto, St. Louis, Missouri 63167.

出版信息

Arch Biochem Biophys. 1993 Aug 1;304(2):345-51. doi: 10.1006/abbi.1993.1360.

Abstract

Recently it has been found that the kinetic mechanism for Escherichia coli 5-enolpyruvoylshikimate-3-phosphate synthase (EPSPS) in the forward direction is random with synergistic binding of substrates and inhibitors (K. J. Gruys, M. C. Walker, and J. A. Sikorski, 1992, Biochemistry 31, 5534). This work, however, did not address the reverse reaction with 5-enolpyruvoylshikimate-3-phosphate (EPSP) and phosphate (Pi) as substrates where a similar question of random versus ordered addition of substrates remained. Previous transient-state kinetic results led to a proposal for an equilibrium-ordered mechanism, where binding of EPSP occurs first followed by Pi (K. S. Anderson, and K. A. Johnson, 1990, Chem. Rev. 90, 1131). Steady-state kinetic results of the reverse reaction presented here suggest that, like the forward reaction, addition of substrates occurs randomly. Initial velocity studies with EPSP and Pi show a normal intersecting pattern in the reciprocal plots, consistent with a random or steady-state-ordered mechanism, but not with equilibrium-ordered addition of substrates. Inhibition of the EPSPS reverse reaction by 5-amino-S3P or the S3P-glyphosate hybrid molecule gave the expected competitive patterns versus EPSP, but mixed noncompetitive patterns versus Pi. These results also disfavor an equilibrium-ordered model, but again are consistent with a random or steady-state-ordered mechanism. A more quantitative mechanistic analysis of the inhibition data to determine the true rather than apparent Ki values provides evidence for a random over a steady-state-ordered addition of substrates. These results in combination with previous findings lead to the conclusion that the mechanism is random addition of EPSP and Pi since it is the only possible model for substrate addition that is consistent with the cumulative data from all kinetic (transient- as well as steady-state) and direct binding studies.

摘要

最近发现,大肠杆菌5-烯醇丙酮酸莽草酸-3-磷酸合酶(EPSPS)正向反应的动力学机制是随机的,底物和抑制剂协同结合(K. J. 格鲁伊斯、M. C. 沃克和J. A. 西科夫斯基,1992年,《生物化学》31卷,5534页)。然而,这项工作没有涉及以5-烯醇丙酮酸莽草酸-3-磷酸(EPSP)和磷酸(Pi)为底物的逆向反应,其中关于底物随机添加还是有序添加的类似问题仍然存在。先前的瞬态动力学结果提出了一种平衡有序机制,即先结合EPSP,然后结合Pi(K. S. 安德森和K. A. 约翰逊,1990年,《化学评论》90卷,1131页)。此处给出的逆向反应稳态动力学结果表明,与正向反应一样,底物的添加是随机的。对EPSP和Pi进行的初速度研究在双倒数图中显示出正常的相交模式,这与随机或稳态有序机制一致,但与底物的平衡有序添加不一致。5-氨基-S3P或S3P-草甘膦杂合分子对EPSPS逆向反应的抑制作用,对EPSP呈现预期的竞争性模式,但对Pi呈现混合型非竞争性模式。这些结果也不支持平衡有序模型,但同样与随机或稳态有序机制一致。对抑制数据进行更定量的机理分析以确定真实而非表观的Ki值,为底物的随机添加而非稳态有序添加提供了证据。这些结果与先前的发现相结合,得出的结论是,该机制是EPSP和Pi的随机添加,因为这是唯一与所有动力学(瞬态和稳态)及直接结合研究的累积数据一致的底物添加模型。

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