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SESAME:一种用于评估由核磁共振数据计算得到的蛋白质结构的最小二乘法。

SESAME: a least-squares approach to the evaluation of protein structures computed from NMR data.

作者信息

Yang J X, Havel T F

机构信息

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115.

出版信息

J Biomol NMR. 1993 May;3(3):355-60. doi: 10.1007/BF00212521.

Abstract

A method is proposed for defining a probability distribution on an ensemble of protein conformations from a 2D NOE spectrum, while at the same time back-calculating the experimental spectrum from the ensemble. This enables one to assess the relative quality and significance of the conformations, and to test the consistency of the ensemble as a whole with the experimental spectrum. The method eliminates the need to integrate the cross-peak intensities and is surprisingly insensitive to random noise in the spectrum. In this communication, these advantages are demonstrated by applying the method to simulated data, for which the correct result is already known.

摘要

本文提出了一种从二维NOE谱定义蛋白质构象集合上概率分布的方法,同时从该集合中反算出实验谱。这使得人们能够评估构象的相对质量和重要性,并测试整个集合与实验谱的一致性。该方法无需对交叉峰强度进行积分,并且令人惊讶地对谱中的随机噪声不敏感。在本通讯中,通过将该方法应用于已知正确结果的模拟数据,展示了这些优点。

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