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以核苷酸混合物为模型,对放线菌素D与DNA结合的复合物进行质子磁共振研究。

Proton magnetic resonance studies of actinomycin D complexes with mixtures of nucleotides as models for the binding of the drug to DNA.

作者信息

Krugh T R, Mooberry E S, Chiao Y C

出版信息

Biochemistry. 1977 Feb 22;16(4):740-7. doi: 10.1021/bi00623a028.

DOI:10.1021/bi00623a028
PMID:836812
Abstract

The proton magnetic resonance spectra of actinomycin solutions with mixtures of deoxynucleotides have been investigated to determine the relative preference for the binding of guanine and adenine nucleotides to the two nucleotide binding sites of actinomycin D. An analysis of the chemical shifts of the actinomycin D resonances shows that adenine and guanine nucleotides competitively bind to the benzenoid portion of the phenoxazone ring of actinomycin D while guanine nucleotides bind stronger than adenine nucleotides to the quinoid portion of the phenoxazone ring. The chemical shift data for the titrations of actinomycin D with pdG-dG, pdC-dC, and an equimolar mixture of these complementary deoxydinucleotides show that: (1) pdG-dG forms a stacked complex much like dGMP; (2) pdC-dC does not bind to actinomycin D under the conditions used in these experiments; (3) in the titration of actinomycin D with the equimolar mixture of pdG-dG + pdC-dC, a miniature intercalated complex is formed.

摘要

已对放线菌素溶液与脱氧核苷酸混合物的质子磁共振谱进行了研究,以确定鸟嘌呤和腺嘌呤核苷酸与放线菌素D的两个核苷酸结合位点结合的相对偏好性。对放线菌素D共振化学位移的分析表明,腺嘌呤和鸟嘌呤核苷酸竞争性地结合到放线菌素D吩恶嗪环的苯环部分,而鸟嘌呤核苷酸比腺嘌呤核苷酸更牢固地结合到吩恶嗪环的醌环部分。用pdG-dG、pdC-dC以及这些互补脱氧二核苷酸的等摩尔混合物对放线菌素D进行滴定的化学位移数据表明:(1)pdG-dG形成了一个类似于dGMP的堆积复合物;(2)在这些实验所用条件下,pdC-dC不与放线菌素D结合;(3)在用pdG-dG + pdC-dC等摩尔混合物滴定放线菌素D时,形成了一个微型插入复合物。

相似文献

1
Proton magnetic resonance studies of actinomycin D complexes with mixtures of nucleotides as models for the binding of the drug to DNA.以核苷酸混合物为模型,对放线菌素D与DNA结合的复合物进行质子磁共振研究。
Biochemistry. 1977 Feb 22;16(4):740-7. doi: 10.1021/bi00623a028.
2
Actinomycin D-deoxynucleotide complexes as models for the actinomycin D-DNA complex. The use of nuclear magnetic resonance to determine the stoichiometry and the geometry of the complexes.放线菌素D - 脱氧核苷酸复合物作为放线菌素D - DNA复合物的模型。利用核磁共振确定复合物的化学计量和几何结构。
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Proc Natl Acad Sci U S A. 1972 Jul;69(7):1911-4. doi: 10.1073/pnas.69.7.1911.
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Ethidium bromide-(dC-dG-dC-dG)2 complex in solution: intercalation and sequence specificity of drug binding at the tetranucleotide duplex level.溶液中的溴化乙锭 -(dC - dG - dC - dG)2 复合物:药物在四核苷酸双链水平上结合的嵌入作用和序列特异性
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Peptide antibiotic-oligonucleotide interactions. Nuclear magnetic resonance investigations of complex formation between actinomycin D and d-ApTpGpCpApT in aqueous solution.肽抗生素 - 寡核苷酸相互作用。放线菌素D与d - ApTpGpCpApT在水溶液中形成复合物的核磁共振研究。
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[Binding of actinomycin C 3 to mono, di, and oligonucleotides].[放线菌素C3与单核苷酸、二核苷酸及寡核苷酸的结合]
Eur J Biochem. 1972 Sep 18;29(2):210-6. doi: 10.1111/j.1432-1033.1972.tb01977.x.

引用本文的文献

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Nucleic Acids Res. 2004 Jan 9;32(1):271-7. doi: 10.1093/nar/gkh178. Print 2004.
2
A chemical enucleation method for the transfer of mitochondrial DNA to rho(o) cells.一种用于将线粒体DNA转移至ρ⁰细胞的化学去核方法。
Nucleic Acids Res. 2003 Aug 15;31(16):e98. doi: 10.1093/nar/gng100.
3
Structure-affinity relationships for the binding of actinomycin D to DNA.放线菌素D与DNA结合的结构-亲和力关系。
J Comput Aided Mol Des. 1997 Mar;11(2):114-28. doi: 10.1023/a:1008018106064.
4
Visualising the kinetics of dissociation of actinomycin from individual sites in mixed sequence DNA by DNase I footprinting.通过DNA酶I足迹法可视化放线菌素从混合序列DNA中各个位点解离的动力学。
Nucleic Acids Res. 1993 Mar 25;21(6):1339-44. doi: 10.1093/nar/21.6.1339.