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YAC克隆有序噬菌体亚文库的构建:人类肌营养不良蛋白基因中一个400kb噬菌体重叠群的构建。

Generation of ordered phage sublibraries of YAC clones: construction of a 400-kb phage contig in the human dystrophin gene.

作者信息

Whittaker P A, Wood L, Mathrubutham M, Anand R

机构信息

University Clinical Biochemistry, Southampton General Hospital, United Kingdom.

出版信息

Genomics. 1993 Feb;15(2):453-6. doi: 10.1006/geno.1993.1089.

DOI:10.1006/geno.1993.1089
PMID:8449519
Abstract

A phage contig of 400 kb that extends from the brain-specific promoter at the 5'-end of the human dystrophin gene, through the muscle-specific promoter over 100 kb further downstream, and across most of intron 1 has been assembled. To achieve this, a yeast artificial chromosome (YAC) subcloning approach was used. Total DNA from a yeast strain containing a 400-kb YAC from the dystrophin gene was cloned using a lambda phage vector containing RNA polymerase promoters flanking the cloning sites. Phage containing human DNA inserts were then ordered into an overlapping set by hybridization of end-specific RNA probes from individual clones back to plaque lifts of gridded phage subclones. The clones generated will be useful as reagents for detailed structural and functional analyses of this region of the dystrophin gene.

摘要

一个400 kb的噬菌体重叠群已经组装完成,它从人类肌营养不良蛋白基因5'端的脑特异性启动子开始,延伸至下游100 kb以外的肌肉特异性启动子,并跨越了大部分内含子1。为实现这一目标,采用了酵母人工染色体(YAC)亚克隆方法。使用一个在克隆位点两侧带有RNA聚合酶启动子的λ噬菌体载体,对来自含有肌营养不良蛋白基因400 kb YAC的酵母菌株的总DNA进行克隆。然后,通过将各个克隆的末端特异性RNA探针与网格化噬菌体亚克隆的菌斑杂交,将含有人类DNA插入片段的噬菌体排列成一个重叠组。所产生的克隆将作为试剂,用于对肌营养不良蛋白基因这一区域进行详细的结构和功能分析。

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Generation of ordered phage sublibraries of YAC clones: construction of a 400-kb phage contig in the human dystrophin gene.YAC克隆有序噬菌体亚文库的构建:人类肌营养不良蛋白基因中一个400kb噬菌体重叠群的构建。
Genomics. 1993 Feb;15(2):453-6. doi: 10.1006/geno.1993.1089.
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引用本文的文献

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Visualization of individual DNA loops and a map of loop domains in the human dystrophin gene.人类肌营养不良蛋白基因中单个DNA环的可视化及环结构域图谱
Nucleic Acids Res. 2004 Apr 15;32(7):2079-86. doi: 10.1093/nar/gkh532. Print 2004.
2
Topoisomerase II hypersensitive sites in the 5'-terminal region of human dystrophin gene.
Dokl Biochem Biophys. 2001 May-Jun;378:198-200. doi: 10.1023/a:1011565229893.
3
A muscle-specific enhancer within intron 1 of the human dystrophin gene is functionally dependent on single MEF-1/E box and MEF-2/AT-rich sequence motifs.人类肌营养不良蛋白基因第1内含子中的一个肌肉特异性增强子在功能上依赖于单个MEF-1/E盒和MEF-2/富含AT序列基序。
Nucleic Acids Res. 1997 Apr 15;25(8):1618-25. doi: 10.1093/nar/25.8.1618.
4
YAC subclone contig assembly by serial interspersed repetitive sequence (IRS)-PCR product hybridizations.通过串联散布重复序列(IRS)-PCR产物杂交进行酵母人工染色体(YAC)亚克隆重叠群组装。
Nucleic Acids Res. 1993 Nov 11;21(22):5275-6. doi: 10.1093/nar/21.22.5275.
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A refined restriction map of YAC clones spanning the entire human dystrophin gene.
Mamm Genome. 1994 Sep;5(9):566-71. doi: 10.1007/BF00354931.