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外显子组测序

Exoquence DNA sequencing.

作者信息

Li C, Tucker P W

机构信息

Department of Microbiology, University of Texas Southwestern Medical Center, Dallas 75235.

出版信息

Nucleic Acids Res. 1993 Mar 11;21(5):1239-44. doi: 10.1093/nar/21.5.1239.

DOI:10.1093/nar/21.5.1239
PMID:8464708
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC309288/
Abstract

We have developed a strategy for DNA sequencing based on exonuclease III digestion followed by double strand specific endonuclease digestion and direct dideoxynucleotide sequencing reaction. This strategy eliminates the need for subcloning, oligonucleotide primers, and prior knowledge of the DNA to be sequenced. All template and primer duplexes needed for sequencing a complete insert can be prepared in one day from uncharacterized starting DNA. Sequence information can be obtained from different regions of the DNA simultaneously. The method uses double-stranded DNA to generate single-stranded template and primer, and thus produces high quality sequence results. Commercially available dideoxy-sequencing kits are well suited for this method. The strategy should be applicable for both automatic and routine laboratory DNA sequencing.

摘要

我们已经开发出一种基于核酸外切酶III消化,随后进行双链特异性核酸内切酶消化和直接双脱氧核苷酸测序反应的DNA测序策略。该策略无需亚克隆、寡核苷酸引物以及对要测序的DNA的先验知识。从未表征的起始DNA中,一天内就能制备出测序完整插入片段所需的所有模板和引物双链体。可同时从DNA的不同区域获得序列信息。该方法利用双链DNA生成单链模板和引物,从而产生高质量的序列结果。市售的双脱氧测序试剂盒非常适合这种方法。该策略应适用于自动和常规实验室DNA测序。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1098/309288/31705cac9cb4/nar00054-0180-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1098/309288/2f1eb8e055f4/nar00054-0179-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1098/309288/855cc03ced0c/nar00054-0180-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1098/309288/31705cac9cb4/nar00054-0180-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1098/309288/2f1eb8e055f4/nar00054-0179-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1098/309288/855cc03ced0c/nar00054-0180-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1098/309288/31705cac9cb4/nar00054-0180-b.jpg

相似文献

1
Exoquence DNA sequencing.外显子组测序
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2
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Multi-priming sequencing: a DNA sequencing method involving restriction enzyme-digested DNA fragments as primers.多重引物测序:一种DNA测序方法,该方法使用经限制性内切酶消化的DNA片段作为引物。
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引用本文的文献

1
Ligation independent cloning irrespective of restriction site compatibility.不依赖连接的克隆,与限制酶切位点兼容性无关。
Nucleic Acids Res. 1997 Oct 15;25(20):4165-6. doi: 10.1093/nar/25.20.4165.
2
DNA-binding properties and secondary structural model of the hepatocyte nuclear factor 3/fork head domain.肝细胞核因子3/叉头结构域的DNA结合特性及二级结构模型
Proc Natl Acad Sci U S A. 1993 Dec 15;90(24):11583-7. doi: 10.1073/pnas.90.24.11583.

本文引用的文献

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A DEOXYRIBONUCLEIC ACID PHOSPHATASE-EXONUCLEASE FROM ESCHERICHIA COLI. II. CHARACTERIZATION OF THE EXONUCLEASE ACTIVITY.来自大肠杆菌的一种脱氧核糖核酸磷酸酶-核酸外切酶。II. 核酸外切酶活性的特性
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Exonuclease III: use for DNA sequence analysis and in specific deletions of nucleotides.核酸外切酶III:用于DNA序列分析和特定核苷酸缺失。
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New rapid methods for DNA sequencing based in exonuclease III digestion followed by repair synthesis.基于核酸外切酶III消化后进行修复合成的新型DNA测序快速方法。
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A DNA fragment with an alpha-phosphorothioate nucleotide at one end is asymmetrically blocked from digestion by exonuclease III and can be replicated in vivo.一端带有α-硫代磷酸酯核苷酸的DNA片段在体外核酸外切酶III的作用下会被不对称地阻断消化,并且能够在体内进行复制。
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Nucleotide sequence analysis of deoxyribonucleic acid. VII. Characterization of Escherichia coli exonuclease 3 activity for possible use in terminal nucleotide sequence analysis of duplex deoxyribonucleic acid.脱氧核糖核酸的核苷酸序列分析。VII. 大肠杆菌核酸外切酶3活性的特性,其可能用于双链脱氧核糖核酸的末端核苷酸序列分析。
J Biol Chem. 1972 Jul 25;247(14):4661-8.
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Fluorescence detection in automated DNA sequence analysis.自动DNA序列分析中的荧光检测。
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Multiplex DNA sequencing.多重DNA测序
Science. 1988 Apr 8;240(4849):185-8. doi: 10.1126/science.3353714.
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Automated Sanger dideoxy sequencing reaction protocol.自动化桑格双脱氧测序反应方案。
FEBS Lett. 1988 Jun 20;233(2):432-6. doi: 10.1016/0014-5793(88)80477-0.