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质粒R1的分配:计算机模拟

Partition of plasmid R1: a computer simulation.

作者信息

Rosenfeld R, Grover N B

机构信息

Hubert H. Humphrey Center for Experimental Medicine and Cancer Research, Faculty of Medicine, Hebrew University, Jerusalem, Israel.

出版信息

Plasmid. 1993 Mar;29(2):117-24. doi: 10.1006/plas.1993.1013.

Abstract

A computer-simulated population of individual Escherichia coli cells harboring plasmid R1 parA+/parB- has been used to analyze three possible modes of plasmid segregation: equi-partition, in which plasmids are partitioned equally to daughter cells at cell division; single-site inheritance, in which the products of the most recent replication event are partitioned equally and the remaining plasmids are distributed randomly; and pair-site partition, in which a single, randomly chosen plasmid is actively partitioned to each daughter cell at division and the rest are distributed randomly. Comparison between predicted and experimental plasmid loss-frequency enabled us to rule out the first of these models as a likely mode of action in R1 but was inconclusive regarding the other two. The parA region would therefore seem to partition actively only one pair of plasmids to each daughter cell, the precise selection rule involved remaining unresolved. This question is not easily decided with current technology, as we show, but our simulation results also predict that the isolation of rep(Ts) mutants will provide an experimental system in which a clear distinction is possible between two plasmids that are the products of the most recent replication event and two that are chosen strictly at random.

摘要

利用计算机模拟的携带质粒R1 parA+/parB-的单个大肠杆菌细胞群体,分析了质粒分离的三种可能模式:均等分配,即质粒在细胞分裂时被平均分配到子细胞中;单位点遗传,即最近一次复制事件的产物被平均分配,其余质粒随机分布;以及双位点分配,即单个随机选择的质粒在分裂时被主动分配到每个子细胞中,其余质粒随机分布。通过比较预测的和实验的质粒丢失频率,我们排除了第一种模型作为R1中可能的作用模式,但对于另外两种模型尚无定论。因此,parA区域似乎仅将一对质粒主动分配到每个子细胞中,所涉及的精确选择规则仍未解决。正如我们所展示的,用当前技术不容易确定这个问题,但我们的模拟结果还预测,rep(Ts)突变体的分离将提供一个实验系统,在该系统中,可以明确区分最近一次复制事件的两个产物质粒和两个完全随机选择的质粒。

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