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用铁卟啉重构的肌红蛋白的结构分析。

Structural analysis of the myoglobin reconstituted with iron porphine.

作者信息

Neya S, Funasaki N, Sato T, Igarashi N, Tanaka N

机构信息

Department of Physical Chemistry, Kyoto Pharmaceutical University, Japan.

出版信息

J Biol Chem. 1993 Apr 25;268(12):8935-42. doi: 10.2210/pdb2cmm/pdb.

Abstract

Sperm whale apomyoglobin was complexed with iron porphine to examine the influence of completely removed heme side chains on the entire molecular structure. Paramagnetic NMR peak from the proximal histidine of the deoxy protein ensured formation of the iron-histidine bond. Porphine pyrrole-proton NMR signals of the cyanmet and deoxy derivatives are unusually sharp single lines manifesting rapid heme rotation about the iron-histidine bond. X-ray crystallographic structure of the cyanmet derivative, determined with a final R factor of 0.21 for 11,808 independent reflections ranging from 7 to 1.8 A, was resolved at 1.8 A resolution. The result confirmed 1:1 coupling between apomyoglobin and iron porphine. The cyano ligand adopts a bent configuration with an Fe-C-N angle of 127 degrees and a Fe-CN distance of 1.89 A. The overall globin structure and side chain conformations are remarkably similar to those of native myoglobin despite intensive disruption of the original heme-globin interactions. The native apoprotein structure unexpectedly conserved even after iron porphine insertion demonstrates that the complex polypeptide fold of holomyoglobin is more inherent in the amino acid sequence than is generally believed.

摘要

将抹香鲸脱辅基肌红蛋白与铁卟啉复合,以研究完全去除血红素侧链对整个分子结构的影响。脱氧蛋白近端组氨酸的顺磁核磁共振峰确保了铁-组氨酸键的形成。高铁氰化物和脱氧衍生物的卟啉吡咯-质子核磁共振信号是异常尖锐的单线,表明血红素围绕铁-组氨酸键快速旋转。高铁氰化物衍生物的X射线晶体结构在1.8埃分辨率下解析,对于11808个7至1.8埃范围内的独立反射,最终R因子为0.21。结果证实了脱辅基肌红蛋白与铁卟啉之间的1:1偶联。氰基配体呈弯曲构型,Fe-C-N角为127度,Fe-CN距离为1.89埃。尽管原始血红素-球蛋白相互作用受到强烈破坏,但整体球蛋白结构和侧链构象与天然肌红蛋白的结构非常相似。即使在插入铁卟啉后,天然脱辅基蛋白结构仍意外地得以保留,这表明全肌红蛋白的复杂多肽折叠在氨基酸序列中比一般认为的更具内在性。

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