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肌红蛋白中血红素的动态运动和分子形状重排:结构和功能后果。

Dynamic motion and rearranged molecular shape of heme in myoglobin: structural and functional consequences.

机构信息

Department of Physical Chemistry, Graduate School of Pharmaceutical Sciences, Chiba University, Chuoh-Inohana, Chiba City, Chiba 260-8675, Japan.

出版信息

Molecules. 2013 Mar 11;18(3):3168-82. doi: 10.3390/molecules18033168.

Abstract

Myoglobin, a simple oxygen binding protein, was reconstituted with various types of synthetic hemes to manipulate the heme-globin interactions. From the paramagnetic NMR analysis, small heme was found to rotate rapidly about the iron-histidine bond upon. This is a novel and typical example for the fluctuation of protein. The dynamic NMR analysis indicated that the 360° rotational rate of a small heme was 1,400 s-1 at room temperature. The X-ray analyses revealed that the tertiary structure of globin containing the smallest heme was closely similar to that of native protein despite extensive destruction of the specific heme-globin interactions. The functional analyses of O2 binding showed that the loose heme-globin contacts do not significantly affect the oxygen binding. On the other hand, the rearrangement of tetrapyrrole array and the non-planar deformation in porphyrin ring significantly affect the functional properties of myoglobin. These results, taken together, indicate that the essential factors to regulate the myoglobin function are hidden under the molecular shape of prosthetic group rather than in the nonbonded heme-globin contacts.

摘要

肌红蛋白是一种简单的氧结合蛋白,用各种类型的合成血红素进行重组以操纵血红素-球蛋白相互作用。通过顺磁 NMR 分析,发现小分子血红素在铁-组氨酸键上快速旋转。这是蛋白质波动的一个新的典型例子。动态 NMR 分析表明,在室温下,小分子血红素的 360°旋转速率为 1400 s-1。X 射线分析表明,尽管特定的血红素-球蛋白相互作用受到广泛破坏,但含有最小血红素的球蛋白的三级结构与天然蛋白质非常相似。O2 结合的功能分析表明,疏松的血红素-球蛋白接触不会显著影响氧结合。另一方面,卟啉环的四吡咯环排列的重排和非平面变形显著影响肌红蛋白的功能特性。这些结果表明,调节肌红蛋白功能的基本因素隐藏在辅基的分子形状下,而不是在非键合的血红素-球蛋白接触中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c5fe/6269712/39547d949f54/molecules-18-03168-g001.jpg

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