Nikiforovich G V, Prakash O M, Gehrig C A, Hruby V J
Department of Chemistry, University of Arizona, Tucson.
Int J Pept Protein Res. 1993 Apr;41(4):347-61. doi: 10.1111/j.1399-3011.1993.tb00451.x.
The solution structures of DPDPE, a conformationally restricted pentapeptide with the sequence H-Tyr1-D-Pen2-Gly3-Phe4-D-Pen5-OH, and its four beta-MePhe4-substituted analogs were examined by a combined approach including the NMR measurements in DMSO and water as well as independent energy calculations. It was concluded that several low energy conformers of DPDPE backbone satisfy the NMR data obtained in this study as well as in previous studies by other authors. These possible solution conformers of DPDPE in both DMSO and water share virtually the same type of cyclic backbone structure, with the Gly3 residue in a conformation close to a gamma-turn, and the Phe4 residue in a conformation close to alpha-helical torsion angles. They differ in the space arrangements of the flexible Tyr1 moiety. The solution structures of the beta-MePhe4-substituted analogs of DPDPE are interesting. For analogs with an S-configuration at the C alpha atom in the Phe4 residue, the cyclic backbone conformations resemble those of DPDPE itself, whereas for analogs with an R-configuration at the C alpha atom, the backbone conformation is somewhat different. This observation is in line with the high biological potencies and selectivities displayed by the former compounds but not by the latter ones. It was noted also that as far as the peptide backbone conformers are concerned, some of the possible DPDPE conformers in water are similar to the previously suggested model for the delta-receptor-bound conformation of DPDPE, becoming virtually identical to this conformation by rotating the side chains of the Tyr1 and the Phe4 residues.
对DPDPE(一种具有H-Tyr1-D-Pen2-Gly3-Phe4-D-Pen5-OH序列的构象受限五肽)及其四种β-MePhe4取代类似物的溶液结构进行了研究,采用了包括在二甲基亚砜(DMSO)和水中进行核磁共振测量以及独立能量计算的综合方法。得出的结论是,DPDPE主链的几个低能量构象异构体符合本研究以及其他作者先前研究中获得的核磁共振数据。DPDPE在DMSO和水中的这些可能的溶液构象异构体实际上具有相同类型的环状主链结构,Gly3残基处于接近γ-转角的构象,Phe4残基处于接近α-螺旋扭转角的构象。它们在柔性Tyr1部分的空间排列上有所不同。DPDPE的β-MePhe4取代类似物的溶液结构很有趣。对于Phe4残基中Cα原子具有S-构型的类似物,环状主链构象类似于DPDPE本身的构象,而对于Cα原子具有R-构型的类似物,主链构象有所不同。这一观察结果与前一类化合物所显示的高生物活性和选择性一致,而后一类化合物则不然。还注意到,就肽主链构象异构体而言,水中一些可能的DPDPE构象与先前提出的DPDPE与δ-受体结合构象的模型相似,通过旋转Tyr1和Phe4残基的侧链,实际上与该构象相同。