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从溶液X射线散射数据确定三维低分辨率病毒结构。

Determination of three-dimensional low-resolution viral structure from solution x-ray scattering data.

作者信息

Zheng Y, Doerschuk P C, Johnson J E

机构信息

School of Electrical Engineering, Purdue University, West Lafayette, Indiana 47907, USA.

出版信息

Biophys J. 1995 Aug;69(2):619-39. doi: 10.1016/S0006-3495(95)79939-8.

DOI:10.1016/S0006-3495(95)79939-8
PMID:8527677
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1236288/
Abstract

The capsid is modeled as a region of constant electron density located between inner and outer envelopes that exhibit icosahedral symmetry. For computational purposes the envelopes are represented as truncated sums of weighted icosahedral harmonics. Methods are described for estimating the weights from x-ray solution scattering patterns based on nonlinear least squares, and two examples of the procedure, for viruses with known atomic-resolution structures, are given.

摘要

衣壳被建模为位于具有二十面体对称性的内外包膜之间的恒定电子密度区域。出于计算目的,包膜表示为加权二十面体谐波的截断和。描述了基于非线性最小二乘法从X射线溶液散射图案估计权重的方法,并给出了该程序的两个示例,用于具有已知原子分辨率结构的病毒。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/f63efe914df1/biophysj00058-0342-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/1abb46698777/biophysj00058-0336-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/301e0378a4c0/biophysj00058-0336-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/645f6a5f7df2/biophysj00058-0338-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/56246c283e65/biophysj00058-0340-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/d54bda6cc91f/biophysj00058-0341-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/f63efe914df1/biophysj00058-0342-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/1abb46698777/biophysj00058-0336-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/301e0378a4c0/biophysj00058-0336-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/645f6a5f7df2/biophysj00058-0338-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/56246c283e65/biophysj00058-0340-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/d54bda6cc91f/biophysj00058-0341-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b1e/1236288/f63efe914df1/biophysj00058-0342-a.jpg

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本文引用的文献

1
Capsid assembly in a family of animal viruses primes an autoproteolytic maturation that depends on a single aspartic acid residue.一类动物病毒中的衣壳组装引发了一种自蛋白水解成熟过程,该过程依赖于单个天冬氨酸残基。
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Assembly of the T = 4 Nudaurelia capensis omega virus capsid protein, post-translational cleavage, and specific encapsidation of its mRNA in a baculovirus expression system.在杆状病毒表达系统中T = 4卡普斯角无尾病毒衣壳蛋白的组装、翻译后切割及其mRNA的特异性包装
Virology. 1995 Feb 20;207(1):89-97. doi: 10.1006/viro.1995.1054.
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Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy.
通过遗传算法从X射线散射中获取的溶液中蛋白质的低分辨率结构。
Biophys J. 1998 Jun;74(6):2760-75. doi: 10.1016/S0006-3495(98)77984-6.
通过X射线晶体学和冷冻电子显微镜确定的豇豆褪绿斑驳病毒天然和肿胀形式的结构。
Structure. 1995 Jan 15;3(1):63-78. doi: 10.1016/s0969-2126(01)00135-6.
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Structure of tomato bushy stunt virus. I. The spherically averaged electron density.
J Mol Biol. 1969 Jun 28;42(3):457-83. doi: 10.1016/0022-2836(69)90236-8.
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Identification of a Fab interaction footprint site on an icosahedral virus by cryoelectron microscopy and X-ray crystallography.通过冷冻电子显微镜和X射线晶体学鉴定二十面体病毒上的Fab相互作用足迹位点。
Nature. 1992 Jan 16;355(6357):275-8. doi: 10.1038/355275a0.
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On the interpretation of small-angle x-ray solution scattering from spherical viruses.关于球形病毒小角X射线溶液散射的解释
J Mol Biol. 1975 Nov 25;99(1):15-25. doi: 10.1016/s0022-2836(75)80155-0.