Zhong M, McCarthy J, Bierwert L, Lizotte-Waniewski M, Chanteau S, Nutman T B, Ottesen E A, Williams S A
Department of Biological Sciences, Clark Science Center, Smith College, Northampton, Massachusetts 01063, USA.
Am J Trop Med Hyg. 1996 Apr;54(4):357-63. doi: 10.4269/ajtmh.1996.54.357.
To identify Wuchereria bancrofti DNA sequences that could be used as the basis for a simple and rapid parasite detection assay, a genomic library of W. bancrofti was constructed and screened for highly repeated DNA. The repeat found with the highest copy number was 195 basepairs (bps) long, 77% AT, and 300 copies per haploid genome. This sequence was designated the Ssp I repeat because it has a unique recognition site for that restriction endonuclease in all or most of the repeat copies. The Ssp I repeat DNA family is dispersed, genus-specific, and exists in all of the different geographic isolates of W. bancrofti tested. Based on DNA sequence analysis of this repeat, we have developed an assay to detect very small quantities of W. bancrofti DNA using the polymerase chain reaction (PCR). With this PCR assay, the Ssp I repeat was detected in as little as 1 pg of w. bancrofti genomic DNA (about 1% of the DNA in one microfilaria) added to 100 microliters of human blood. The PCR assay also amplified Ssp I repeat DNA from geographic isolates of W. bancrofti from around the world but not from other species of filariae or from human or mosquito DNA. Microfilaria-positive human blood samples collected in Mauke, Cook Islands were shown to be Ssp I PCR-positive, while microfilaria-negative samples were PCR-negative. The specificity and sensitivity of the Ssp I PCR assay indicates that this approach has significant potential for improved screening of large human populations for active W. bancrofti infection.
为了鉴定可作为简单快速寄生虫检测分析基础的班氏吴策线虫DNA序列,构建了班氏吴策线虫基因组文库并筛选高度重复DNA。发现的拷贝数最高的重复序列长195个碱基对(bps),AT含量为77%,单倍体基因组中每300个拷贝中有一个。该序列被命名为Ssp I重复序列,因为在所有或大多数重复拷贝中它对该限制性内切酶有一个独特的识别位点。Ssp I重复DNA家族是分散的、属特异性的,并且存在于所有测试的班氏吴策线虫不同地理分离株中。基于对该重复序列的DNA序列分析,我们开发了一种使用聚合酶链反应(PCR)检测极少量班氏吴策线虫DNA的分析方法。通过这种PCR分析,在加入100微升人血的低至1皮克班氏吴策线虫基因组DNA(约为一条微丝蚴中DNA的1%)中检测到了Ssp I重复序列。该PCR分析还扩增了来自世界各地班氏吴策线虫地理分离株的Ssp I重复DNA,但未扩增来自其他丝虫物种或人或蚊子DNA的该序列。在库克群岛莫克收集的微丝蚴阳性人血样本显示为Ssp I PCR阳性,而微丝蚴阴性样本为PCR阴性。Ssp I PCR分析的特异性和敏感性表明,这种方法在改进对大量人群进行活动性班氏吴策线虫感染筛查方面具有巨大潜力。