• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过电喷雾电离飞行时间质谱法探究一种酶的寡聚结构。

Probing the oligomeric structure of an enzyme by electrospray ionization time-of-flight mass spectrometry.

作者信息

Fitzgerald M C, Chernushevich I, Standing K G, Whitman C P, Kent S B

机构信息

The Scripps Research Institute, La Jolla, CA 92037, USA.

出版信息

Proc Natl Acad Sci U S A. 1996 Jul 9;93(14):6851-6. doi: 10.1073/pnas.93.14.6851.

DOI:10.1073/pnas.93.14.6851
PMID:8692908
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC38896/
Abstract

Electrospray ionization time-of-flight (ESI-TOF) mass spectrometry was used to study the quaternary structure of 4-oxalocrotonate tautomerase (EC 5.3.2; 4OT), and four analogues prepared by total chemical synthesis. Wild-type 4OT is a hexamer of 62 amino acid subunits and contains no cysteine residues. The analogues were: (desPro1)4OT, a truncated construct in which Pro1 was deleted; (Cpc1)4OT in which Pro1 was replaced with cyclopentane carboxylate; a derivative [Met(O)45]4OT in which Met45 was oxidized to the sulfoxide; and an analogue (Nle45)4OT in which Met45 was replaced with norleucine. ESI of (Nle45)4OT, (Cpc1)4OT, and 4OT from solution conditions under which the native enzyme was fully active (5 mM ammonium bicarbonate buffer, pH 7.5) gave the intact hexamer as the major species detected by TOF mass spectrometry. In contrast, analysis of [Met(O)45]4OT and (desPro1)4OT under similar conditions yielded predominantly monomer ions. The ESI-TOF measurements were consistent with structural data obtained from circular dichroism spectroscopy. In the context of kinetic data collected for 4OT and these analogues, ESI-TOF mass spectrometry also provided important evidence for the structural and mechanistic significance of the catalytically important Pro1 residue in 4OT.

摘要

采用电喷雾电离飞行时间(ESI-TOF)质谱法研究了4-草酰巴豆酸互变异构酶(EC 5.3.2;4OT)及其通过全化学合成制备的四种类似物的四级结构。野生型4OT是由62个氨基酸亚基组成的六聚体,不含半胱氨酸残基。这些类似物分别为:(desPro1)4OT,一种缺失Pro1的截短构建体;(Cpc1)4OT,其中Pro1被环戊烷羧酸取代;衍生物[Met(O)45]4OT,其中Met45被氧化为亚砜;以及类似物(Nle45)4OT,其中Met45被正亮氨酸取代。在天然酶完全活性的溶液条件下(5 mM碳酸氢铵缓冲液,pH 7.5),对(Nle45)4OT、(Cpc1)4OT和4OT进行电喷雾电离,飞行时间质谱检测到的主要物种为完整的六聚体。相比之下,在类似条件下对[Met(O)45]4OT和(desPro1)4OT进行分析,主要产生单体离子。ESI-TOF测量结果与圆二色光谱获得的结构数据一致。结合为4OT及其这些类似物收集的动力学数据,ESI-TOF质谱法还为4OT中具有催化重要性的Pro1残基的结构和机制意义提供了重要证据。

相似文献

1
Probing the oligomeric structure of an enzyme by electrospray ionization time-of-flight mass spectrometry.通过电喷雾电离飞行时间质谱法探究一种酶的寡聚结构。
Proc Natl Acad Sci U S A. 1996 Jul 9;93(14):6851-6. doi: 10.1073/pnas.93.14.6851.
2
Comparative analysis of two different amide-to-ester bond mutations in the beta-sheet of 4-oxalocrotonate tautomerase.4-草酰巴豆酸互变异构酶β-折叠中两种不同酰胺键至酯键突变的比较分析。
Biochemistry. 2003 Jun 3;42(21):6620-30. doi: 10.1021/bi020700b.
3
Mapping tertiary interactions in protein folding reactions: a novel mass spectrometry- and chemical synthesis-based approach.绘制蛋白质折叠反应中的三级相互作用:一种基于质谱和化学合成的新方法。
Fresenius J Anal Chem. 2001 Feb;369(3-4):252-7. doi: 10.1007/s002160000644.
4
The protein backbone makes important contributions to 4-oxalocrotonate tautomerase enzyme catalysis: understanding from theory and experiment.蛋白质主链对4-草酰巴豆酸互变异构酶的催化作用有重要贡献:来自理论和实验的认识
Biochemistry. 2004 Jun 8;43(22):6885-92. doi: 10.1021/bi049943p.
5
A stable dimer in the pH-induced equilibrium unfolding of the homo-hexameric enzyme 4-oxalocrotonate tautomerase (4-OT).在同六聚体酶4-草酰巴豆酸互变异构酶(4-OT)的pH诱导平衡去折叠过程中的一种稳定二聚体。
Biochemistry. 2002 Apr 2;41(13):4480-91. doi: 10.1021/bi011872w.
6
The product of the natural reaction catalyzed by 4-oxalocrotonate tautomerase becomes an affinity label of its mutant.由4-草酰巴豆酸互变异构酶催化的自然反应产物成为其突变体的亲和标记。
Bioorg Med Chem. 2002 Dec;10(12):3891-7. doi: 10.1016/s0968-0896(02)00385-1.
7
Systematic screening for catalytic promiscuity in 4-oxalocrotonate tautomerase: enamine formation and aldolase activity.系统筛选 4-氧代戊烯二酸互变异构酶的催化多功能性:烯胺形成和醛缩酶活性。
Chembiochem. 2011 Mar 7;12(4):602-9. doi: 10.1002/cbic.201000633. Epub 2011 Feb 3.
8
The 4-oxalocrotonate tautomerase family of enzymes: how nature makes new enzymes using a beta-alpha-beta structural motif.4-草酰巴豆酸互变异构酶家族:自然界如何利用β-α-β结构基序产生新酶。
Arch Biochem Biophys. 2002 Jun 1;402(1):1-13. doi: 10.1016/S0003-9861(02)00052-8.
9
Inactivation of 4-oxalocrotonate tautomerase by 2-oxo-3-pentynoate.2-氧代-3-戊炔酸对4-草酰巴豆酸互变异构酶的失活作用
Biochemistry. 1997 Dec 16;36(50):15724-32. doi: 10.1021/bi971608w.
10
Evolution of enzymatic activity in the tautomerase superfamily: mechanistic and structural consequences of the L8R mutation in 4-oxalocrotonate tautomerase.互变异构酶超家族中酶活性的演变:4-草酰巴豆酸互变异构酶中L8R突变的机制和结构后果
Biochemistry. 2006 Jun 27;45(25):7700-8. doi: 10.1021/bi0600603.

引用本文的文献

1
Extraction, Purification, and Characterization of Olive ( L., cv. Chemlal) Polyphenol Oxidase.橄榄(L.,品种 Chemlal)多酚氧化酶的提取、纯化和特性研究。
J Agric Food Chem. 2024 Feb 14;72(6):3099-3112. doi: 10.1021/acs.jafc.3c07776. Epub 2024 Jan 30.
2
Orbitrap-Based Mass and Charge Analysis of Single Molecules.基于轨道阱的单分子质量荷比分析。
Acc Chem Res. 2023 Jun 20;56(12):1458-1468. doi: 10.1021/acs.accounts.3c00079. Epub 2023 Jun 6.
3
Approaches to Heterogeneity in Native Mass Spectrometry.基于天然质谱的异质性方法。
Chem Rev. 2022 Apr 27;122(8):7909-7951. doi: 10.1021/acs.chemrev.1c00696. Epub 2021 Sep 1.
4
Native Mass Spectrometry of Membrane Proteins.膜蛋白的原生质谱分析
Anal Chem. 2021 Jan 12;93(1):583-597. doi: 10.1021/acs.analchem.0c04342. Epub 2020 Oct 28.
5
Ammonium Bicarbonate Addition Improves the Detection of Proteins by Desorption Electrospray Ionization Mass Spectrometry.碳酸氢铵添加可提高解吸电喷雾电离质谱法检测蛋白质的效果。
J Am Soc Mass Spectrom. 2017 Jun;28(6):1109-1117. doi: 10.1007/s13361-017-1628-9. Epub 2017 Mar 17.
6
Native Mass Spectrometry Analysis of Oligomerization States of Fluorescence Recovery Protein and Orange Carotenoid Protein: Two Proteins Involved in the Cyanobacterial Photoprotection Cycle.荧光恢复蛋白和橙色类胡萝卜素蛋白低聚化状态的原生质谱分析:参与蓝藻光保护循环的两种蛋白质
Biochemistry. 2017 Jan 10;56(1):160-166. doi: 10.1021/acs.biochem.6b01094. Epub 2016 Dec 20.
7
Native Mass Spectrometry: What is in the Name?Native Mass Spectrometry:名称中蕴含的意义
J Am Soc Mass Spectrom. 2017 Jan;28(1):5-13. doi: 10.1007/s13361-016-1545-3. Epub 2016 Dec 1.
8
The diverse and expanding role of mass spectrometry in structural and molecular biology.质谱分析法在结构生物学和分子生物学中多样且不断扩展的作用。
EMBO J. 2016 Dec 15;35(24):2634-2657. doi: 10.15252/embj.201694818. Epub 2016 Oct 26.
9
ClusPro-DC: Dimer Classification by the Cluspro Server for Protein-Protein Docking.ClusPro-DC:通过ClusPro服务器进行蛋白质-蛋白质对接的二聚体分类
J Mol Biol. 2017 Feb 3;429(3):372-381. doi: 10.1016/j.jmb.2016.10.019. Epub 2016 Oct 19.
10
Salt Bridge Rearrangement (SaBRe) Explains the Dissociation Behavior of Noncovalent Complexes.盐桥重排(SaBRe)解释了非共价复合物的离解行为。
J Am Soc Mass Spectrom. 2016 Jun;27(6):975-90. doi: 10.1007/s13361-016-1375-3. Epub 2016 Apr 6.

本文引用的文献

1
4-Oxalocrotonate tautomerase: pH dependence of catalysis and pKa values of active site residues.4-草酰巴豆酸互变异构酶:催化作用的pH依赖性及活性位点残基的pKa值
Biochemistry. 1996 Jan 23;35(3):814-23. doi: 10.1021/bi9510789.
2
Catalytic role of the amino-terminal proline in 4-oxalocrotonate tautomerase: affinity labeling and heteronuclear NMR studies.4-草酰巴豆酸互变异构酶中氨基末端脯氨酸的催化作用:亲和标记和异核核磁共振研究
Biochemistry. 1996 Jan 23;35(3):803-13. doi: 10.1021/bi951077g.
3
Enzymatic ketonization of 2-hydroxymuconate: specificity and mechanism investigated by the crystal structures of two isomerases.2-羟基粘康酸的酶促酮化反应:通过两种异构酶的晶体结构研究其特异性和机制
Biochemistry. 1996 Jan 23;35(3):792-802. doi: 10.1021/bi951732k.
4
Reflecting time-of-flight mass spectrometer with an electrospray ion source and orthogonal extraction.带有电喷雾离子源和正交提取的反射式飞行时间质谱仪。
Anal Chem. 1994 Jan 1;66(1):126-33. doi: 10.1021/ac00073a022.
5
Preliminary crystallographic analysis of 4-oxalocrotonate tautomerase reveals the oligomeric structure of the enzyme.4-草酰巴豆酸互变异构酶的初步晶体学分析揭示了该酶的寡聚结构。
J Mol Biol. 1994 Nov 4;243(4):799-801. doi: 10.1016/0022-2836(94)90050-7.
6
Investigation of protein-protein noncovalent interactions in soybean agglutinin by electrospray ionization time-of-flight mass spectrometry.用电喷雾电离飞行时间质谱法研究大豆凝集素中蛋白质-蛋白质非共价相互作用
Rapid Commun Mass Spectrom. 1994 Sep;8(9):750-4. doi: 10.1002/rcm.1290080918.
7
Transposon mutagenesis analysis of meta-cleavage pathway operon genes of the TOL plasmid of Pseudomonas putida mt-2.恶臭假单胞菌mt-2的TOL质粒间位裂解途径操纵子基因的转座子诱变分析
J Bacteriol. 1984 Oct;160(1):251-5. doi: 10.1128/jb.160.1.251-255.1984.
8
Determination of the helix and beta form of proteins in aqueous solution by circular dichroism.通过圆二色性测定水溶液中蛋白质的螺旋和β折叠形式。
Biochemistry. 1974 Jul 30;13(16):3350-9. doi: 10.1021/bi00713a027.
9
Physically associated enzymes produce and metabolize 2-hydroxy-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida.物理关联的酶产生并代谢2-羟基-2,4-二烯酸酯,这是恶臭假单胞菌中通过间位裂解途径进行儿茶酚代谢时形成的一种化学性质不稳定的中间体。
J Bacteriol. 1989 Nov;171(11):6251-8. doi: 10.1128/jb.171.11.6251-6258.1989.
10
4-Oxalocrotonate tautomerase, an enzyme composed of 62 amino acid residues per monomer.4-草酰巴豆酸互变异构酶,一种每个单体由62个氨基酸残基组成的酶。
J Biol Chem. 1992 Sep 5;267(25):17716-21.