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SIGNAL SCAN 4.0: additional databases and sequence formats.

作者信息

Prestridge D S

机构信息

Department of Biochemistry, University of Minnesota, St. Paul 55108, USA.

出版信息

Comput Appl Biosci. 1996 Apr;12(2):157-60. doi: 10.1093/bioinformatics/12.2.157.

DOI:10.1093/bioinformatics/12.2.157
PMID:8744779
Abstract

SIGNAL SCAN is a program that utilizes transcription factor databases to find potential transcription factor binding sites in DNA sequences. The program is now in its fourth version. SIGNAL SCAN 4 now includes, in addition to the Transcription Factor Database, the TRANSFAC and IMD (Information Matrix Database) databases. In addition, it now accepts GCG and FASTA formatted DNA sequences in addition to Staden formatted sequences. SIGNAL SCAN is available for both IBM-compatible PC and Unix workstation platforms.

摘要

相似文献

1
SIGNAL SCAN 4.0: additional databases and sequence formats.
Comput Appl Biosci. 1996 Apr;12(2):157-60. doi: 10.1093/bioinformatics/12.2.157.
2
MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices.MATRIX SEARCH 1.0：一种利用权重矩阵数据库扫描DNA序列以寻找转录元件的计算机程序。
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3
SIGNAL SCAN 3.0: new database and program features.信号扫描3.0：新数据库和程序功能。
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Genome Inform. 2005;16(1):68-72.
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Staden: sequence input, editing, and sequence library use.Staden：序列输入、编辑及序列库使用。
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Staden: managing sequence projects.斯塔登：管理序列项目。
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7
Using the FASTA program to search protein and DNA sequence databases.使用FASTA程序搜索蛋白质和DNA序列数据库。
Methods Mol Biol. 1994;24:307-31. doi: 10.1385/0-89603-246-9:307.
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TargetFinder: searching annotated sequence databases for target genes of transcription factors.
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Computer analysis of sequence data.序列数据的计算机分析。
Methods Mol Biol. 1994;25:1-8. doi: 10.1385/0-89603-276-0:1.

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