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玻尔兹曼加权因子对环(甘氨酸-脯氨酸-甘氨酸)2预测的π-π*圆二色光谱的力场依赖性。

Force-field dependence of Boltzmann weighting factors on predicted pi-pi* circular dichroic spectra of cyclo (Gly-Pro-Gly)2.

作者信息

MacFarlane K J, Humbert M M, Thomasson K A

机构信息

Chemistry Department, University of North Dakota, Grand Forks, USA.

出版信息

Int J Pept Protein Res. 1996 Jun;47(6):447-59. doi: 10.1111/j.1399-3011.1996.tb01095.x.

Abstract

Semi-empirical energy calculations were performed for published conformations of cyclo (Gly-Pro-Gly)2 using different force fields (DISCOVER cvff and cff91, AMBER, and CHARMM). The resulting potential energies were then used to create Boltzmann weighting factors for an ensemble of cyclo(Gly-Pro-Gly)2 structures. The dipole interaction model was used to predict pi-pi* circular dichroic spectra (CD) for the individual structures of cyclo(Gly-Pro-Gly)2. The Boltzmann weighting factors were applied to the individual spectra so that a composite spectrum was constructed to represent a CD arising from a collection of different structures in solution. Weighting factors determined from different force fields were compared. Boltzmann-weighted spectra better resembled the experimental CD than any calculated spectrum using only a single conformation of cyclo (Gly-Pro-Gly)2. The structures most heavily weighted contained at least one type I beta-turn.

摘要

使用不同的力场(DISCOVER cvff和cff91、AMBER以及CHARMM)对已发表的环(甘氨酸-脯氨酸-甘氨酸)₂构象进行了半经验能量计算。然后,将得到的势能用于为环(甘氨酸-脯氨酸-甘氨酸)₂结构集合创建玻尔兹曼加权因子。偶极相互作用模型用于预测环(甘氨酸-脯氨酸-甘氨酸)₂各个结构的π-π*圆二色光谱(CD)。将玻尔兹曼加权因子应用于各个光谱,从而构建出一个复合光谱,以表示溶液中不同结构集合产生的CD。比较了由不同力场确定的加权因子。与仅使用环(甘氨酸-脯氨酸-甘氨酸)₂单一构象计算得到的任何光谱相比,玻尔兹曼加权光谱更类似于实验CD光谱。权重最大的结构至少包含一种I型β-转角。

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