Sathyanarayana B K, Applequist J
Int J Pept Protein Res. 1985 Nov;26(5):518-27. doi: 10.1111/j.1399-3011.1985.tb01019.x.
The dipole interaction model, treated by the partially dispersive normal mode method, is used to calculate circular dichroic spectra of cyclo(Gly-Gly), cyclo (Ala-Gly), cyclo(Ala-Ala), cyclo(Pro-Gly), cyclo(Pro-Ala), cyclo(Pro-Val), cyclo (Pro-D-Val), and cyclo(Pro-Pro) in the amide pi-pi* absorption band near 190 nm. Assuming a standard backbone geometry, spectra which are in fair to good agreement with experiment are obtained for these molecules. The spectra are predicted to be sensitive to conformations of Pro and Val side chains. The effects of dipeptide ring folding on calculated CD spectra are mostly consistent with those found by other workers, except that it is found that a planar ring conformation of cyclo (Ala-Ala) and cyclo (Ala-Gly) gives predicted spectra comparable to experiment. The same model gives theoretical absorption spectra consistent with available experimental data.
采用部分色散简正模式方法处理的偶极相互作用模型,用于计算环(甘氨酸-甘氨酸)、环(丙氨酸-甘氨酸)、环(丙氨酸-丙氨酸)、环(脯氨酸-甘氨酸)、环(脯氨酸-丙氨酸)、环(脯氨酸-缬氨酸)、环(脯氨酸-D-缬氨酸)和环(脯氨酸-脯氨酸)在190nm附近酰胺π-π*吸收带的圆二色光谱。假设标准主链几何结构,得到了与实验结果相当吻合的这些分子的光谱。预计这些光谱对脯氨酸和缬氨酸侧链的构象敏感。二肽环折叠对计算得到的圆二色光谱的影响大多与其他研究者的结果一致,只是发现环(丙氨酸-丙氨酸)和环(丙氨酸-甘氨酸)的平面环构象给出的预测光谱与实验相当。同一模型给出的理论吸收光谱与现有实验数据一致。