Zhang Q, Iwasaki T, Wakagi T, Oshima T
Department of Life Science, Tokyo Institute of Technology, Yokohama.
J Biochem. 1996 Sep;120(3):587-99. doi: 10.1093/oxfordjournals.jbchem.a021454.
The purified 2-oxoacid:ferredoxin oxidoreductase of a thermoacidophilic and aerobic crenarchaeote, Sulfolobus sp. strain 7, consists of 70-kDa alpha and 37-kDa beta subunits, and contains one thiamine pyrophosphate (TPP), one [4Fe-4S]2+.1+ cluster, and two magnesium atoms per alpha beta structure. It exhibits a broad substrate specificity toward 2-oxoacids such as 2-oxoglutarate, 2-oxobutyrate, and pyruvate. The gene encoding the archaeal oxidoreductase was cloned, and the two open reading frames encoding the alpha (632 amino acids) and beta subunits (305 amino acids), respectively, were sequenced. Careful sequence alignment revealed several consensus motifs of this enzyme family, as well as possible cofactor binding residues of the Sulfolobus enzyme. This new structural information also indicates that (i) several genetic fusions and reorganization of the early, possibly alpha beta gamma delta-type enzyme similar to those from hyperthermophiles have taken place during evolution of the 2-oxoacid:ferredoxin (flavodoxin) oxidoreductase superfamily, which might have occurred in different ways in early aerobic archaea and early anaerobic bacteria, and that (ii) enzymes with different subunit compositions should have an essentially similar catalytic mechanism with one TPP and at least one [4Fe-4S] cluster as the minimal set of redox centers.
嗜热嗜酸需氧泉古菌硫化叶菌属菌株7纯化后的2-氧代酸:铁氧化还原蛋白氧化还原酶由70 kDa的α亚基和37 kDa的β亚基组成,每个αβ结构含有一个硫胺焦磷酸(TPP)、一个[4Fe-4S]2+.1+簇和两个镁原子。它对2-氧代酸如2-氧代戊二酸、2-氧代丁酸和丙酮酸表现出广泛的底物特异性。编码该古菌氧化还原酶的基因被克隆,分别对编码α亚基(632个氨基酸)和β亚基(305个氨基酸)的两个开放阅读框进行了测序。仔细的序列比对揭示了该酶家族的几个共有基序,以及硫化叶菌酶可能的辅因子结合残基。这一新的结构信息还表明:(i)在2-氧代酸:铁氧化还原蛋白(黄素氧化还原蛋白)氧化还原酶超家族的进化过程中,发生了几次与嗜热菌早期可能类似的αβγδ型酶的基因融合和重组,这可能在早期需氧古菌和早期厌氧细菌中以不同方式发生;(ii)具有不同亚基组成的酶应该具有基本相似的催化机制,以一个TPP和至少一个[4Fe-4S]簇作为最小的氧化还原中心集。