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HLA - DRB9基因与HLA - DR单倍型的起源

The HLA-DRB9 gene and the origin of HLA-DR haplotypes.

作者信息

Gongora R, Figueroa F, Klein J

机构信息

Max-Planck-Institut für Biologie, Abteilung Immungenetik, Tübingen, Germany.

出版信息

Hum Immunol. 1996 Nov;51(1):23-31. doi: 10.1016/s0198-8859(96)00189-9.

DOI:10.1016/s0198-8859(96)00189-9
PMID:8911994
Abstract

HLA-DRB9 is a gene fragment consisting of exon 2 and flanking intron sequences. It is located at the extreme end of the DRB subregion, whose other end is demarcated by the DRB1 locus. We sequenced approximately 1400 base pairs of the segment encompassing the DRB9 locus from eight human haplotypes (DR1, DR10, DR2, DR3, DR5, DR6, DR8, and DR9, the DR4 and DR7 having been sequenced by others earlier), as well as two chimpanzee, five gorillas, one orangutan and one macaque haplotype. The analysis of these sequences indicates that the DRB9 locus, which we estimate to be more than 58 million years (my) old, has been coevolving with the DRB1 locus for the last 4.2 my. As a consequence of this coevolution, the human DRB9 alleles fall into groups that correlate with the DRB1 allelic groups and with the gene organization of the human haplotypes. This observation implies that the present-day HLA-DR haplotype groups (DR1, DR51, DR52, DR8, and DR53) were founded more than 4 my ago and have remained intact (barring minor internal rearrangements that did not recombine the DRB1 and DRB9 genes) for this period of time. The haplotypes have been transmitted during speciations from ancestral to emerging species just like allelic lineages at the DRB1 locus. Thus not only allelic but also haplotype polymorphism evolves trans-specifically.

摘要

HLA - DRB9是一个由外显子2和侧翼内含子序列组成的基因片段。它位于DRB亚区域的最末端,该区域的另一端由DRB1基因座划定。我们对来自8种人类单倍型(DR1、DR10、DR2、DR3、DR5、DR6、DR8和DR9,DR4和DR7已由其他人先前测序)以及2种黑猩猩、5种大猩猩、1种猩猩和1种猕猴单倍型的包含DRB9基因座的片段进行了约1400个碱基对的测序。对这些序列的分析表明,我们估计有超过5800万年历史的DRB9基因座在过去420万年中一直与DRB1基因座共同进化。这种共同进化的结果是,人类DRB9等位基因可分为与DRB1等位基因组以及人类单倍型的基因组织相关的组。这一观察结果意味着,当今的HLA - DR单倍型组(DR1、DR51、DR52、DR8和DR53)在400多万年前就已形成,并且在此期间一直保持完整(除了未重组DRB1和DRB9基因的微小内部重排)。这些单倍型在物种形成过程中像DRB1基因座的等位基因谱系一样从祖先物种传递到新出现的物种。因此,不仅等位基因多态性,而且单倍型多态性都是跨物种进化的。

相似文献

1
The HLA-DRB9 gene and the origin of HLA-DR haplotypes.HLA - DRB9基因与HLA - DR单倍型的起源
Hum Immunol. 1996 Nov;51(1):23-31. doi: 10.1016/s0198-8859(96)00189-9.
2
Complex origin of the HLA-DR10 haplotype.HLA-DR10单倍型的复杂起源。
J Immunol. 1997 Dec 15;159(12):6044-51.
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Phylogenetic history of hominoid DRB loci and alleles inferred from intron sequences.从内含子序列推断的类人猿DRB基因座和等位基因的系统发育史。
Immunol Rev. 1999 Feb;167:351-65. doi: 10.1111/j.1600-065x.1999.tb01404.x.
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Primate DRB genes from the DR3 and DR8 haplotypes contain ERV9 LTR elements at identical positions.来自DR3和DR8单倍型的灵长类DRB基因在相同位置含有ERV9长末端重复序列元件。
Immunogenetics. 1995;41(2-3):74-82. doi: 10.1007/BF00182316.
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Mhc-DRB and -DQA1 nucleotide sequences of three lowland gorillas. Implications for the evolution of primate Mhc class II haplotypes.三只低地大猩猩的Mhc - DRB和 - DQA1核苷酸序列。对灵长类Mhc II类单倍型进化的启示。
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Characterization of three separated exons in the HLA class II DR region of the human major histocompatibility complex.人类主要组织相容性复合体HLA II类DR区域中三个分离外显子的特征分析。
Hum Immunol. 1995 Mar;42(3):254-64. doi: 10.1016/0198-8859(94)00102-v.
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Comparative anatomy of the primate major histocompatibility complex DR subregion: evidence for combinations of DRB genes conserved across species.灵长类主要组织相容性复合体DR亚区的比较解剖学:跨物种保守的DRB基因组合的证据。
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Mhc-DRB diversity of the chimpanzee (Pan troglodytes).黑猩猩(Pan troglodytes)的主要组织相容性复合体Ⅱ类基因DRB多样性
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HLA-DRB9--possible remnant of an ancient functional DRB subregion.
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