Use of infrared multiphoton photodissociation with SWIFT for electrospray ionization and laser desorption applications in a quadrupole ion trap mass spectrometer.

Infrared multiphoton photodissociation (IRMPD) is combined with stored wave form inverse Fourier transforms (SWIFT) to effect dissociation and ion ejection in a quadrupole ion trap mass spectrometer. The application of IRMPD to the structural characterization of biochemical ions generated by chemical ionization and electrospray ionization and the feasibility of utilizing infrared photons for the activation of laser-desorbed metal ion-crown ether complexes was examined. The effect of helium pressure on the dissociation efficiency and relative dissociation rate constants for systems with well-known thermochemistry was evaluated. The helium pressure is not detrimental to the IRMPD experiment when nominal pressures lower than 2 x 10(-5) Torr are used. At pressures close to nominally 8 x 10(-5) Torr of helium, collisonal deactivation dominates. Results show conventional CAD is a more selective dissociation technique; however, the amount of fragment ion information generated depends highly on the qz value. IRMPD, on the other hand, is independent of the value of qz such that low rf storage values can be utilized during the irradiation period. Thus, under these conditions, informative lower mass fragment ions are trapped and detected. A larger number of structurally informative fragments is generated upon irradiation with infrared photons relative to the CAD method because of the further excitation of primary fragment ions upon photoabsorption. SWIFT wave forms are successfully utilized to determine the extent of excitation of primary fragment ions as well as prove/disprove dissociation pathways of a variety of ions such as macrolide antibiotics and hydrogen-bonded complexes.