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New evidence that the hydrophobic effect and dispersion are not major driving forces for nucleotide base stacking.

作者信息

Gellman S H, Haque T S, Newcomb L F

出版信息

Biophys J. 1996 Dec;71(6):3523-6. doi: 10.1016/S0006-3495(96)79547-4.

DOI:10.1016/S0006-3495(96)79547-4
PMID:8968621
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1233839/
Abstract
摘要

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本文引用的文献

1
A free energy analysis of nucleic acid base stacking in aqueous solution.水溶液中核酸碱基堆积的自由能分析。
Biophys J. 1995 Oct;69(4):1528-35. doi: 10.1016/S0006-3495(95)80023-8.
2
Solvent effects on thermodynamics of double-helix formation in (dG-dC)3.溶剂对(dG-dC)3中双螺旋形成热力学的影响。
Biochemistry. 1981 Mar 17;20(6):1413-8. doi: 10.1021/bi00509a002.
3
Stacking properties of a highly hydrophobic dinucleotide sequence, N6, N6-dimethyladenylyl(3' leads to 5')N6, N6-dimethyladenosine, occurring in 16--18-S ribosomal RNA.存在于16 - 18S核糖体RNA中的高度疏水二核苷酸序列N6，N6 - 二甲基腺苷酰基（3'→5'）N6，N6 - 二甲基腺苷的堆积特性
Eur J Biochem. 1980 Aug;109(1):33-8. doi: 10.1111/j.1432-1033.1980.tb04764.x.
4
The importance of London dispersion forces in the maintenance of the deoxyribonucleic acid helix.伦敦色散力在维持脱氧核糖核酸双螺旋结构中的重要性。
Biochem Biophys Res Commun. 1966 Jun 21;23(6):861-7. doi: 10.1016/0006-291x(66)90567-5.
5
Stereochemistry of nucleic acids and their constituents. X. Solid-state base-stacking patterns in nucleic acid constituents and polynucleotides.核酸及其成分的立体化学。X.核酸成分和多核苷酸中的固态碱基堆积模式。
Biopolymers. 1971;10(1):175-219. doi: 10.1002/bip.360100113.
6
Thermodynamic studies of a model system for hydrophobic bonding.疏水键合模型系统的热力学研究。
Biochemistry. 1968 May;7(5):1823-7. doi: 10.1021/bi00845a029.
7
Base stacking and molecular polarizability: effect of a methyl group in the 5-position of pyrimidines.碱基堆积与分子极化率：嘧啶5位上甲基的影响
Biochem Biophys Res Commun. 1987 Oct 29;148(2):790-4. doi: 10.1016/0006-291x(87)90945-4.
8
Origin of DNA helical structure and its sequence dependence.DNA螺旋结构的起源及其序列依赖性。
Biochemistry. 1988 Nov 1;27(22):8498-502. doi: 10.1021/bi00422a030.