Ubbink M, Pfuhl M, van der Oost J, Berg A, Canters G W
Leiden Institute of Chemistry, Gorlaeus Laboratories, The Netherlands.
Protein Sci. 1996 Dec;5(12):2494-505. doi: 10.1002/pro.5560051212.
Cytochrome c-550 of Thiobacillus versutus functions as an electron transfer protein in a chain of redox proteins that enables T. versutus to grow on methylamine. It is a single-heme protein of 134 residues, related to mitochondrial cytochrome c. Cytochrome c-550, as well as several other bacterial c2-type cytochromes, contain a C-terminal extension of 13-16 amino acids of unknown function, compared to mitochondrial cytochrome c. NMR experiments were performed to obtain structural and dynamic information on the protein in solution. For this purpose, T. versutus cytochrome c-550 was labeled with 15N and 13C using 13C-methanol grown Paracoccus denitrificans as a host for heterologous expression. NMR assignments were obtained for the 1H, 15N, and 13C nuclei in the backbone and the beta-positions of the protein and the secondary structure was determined. 15N-relaxation studies were performed to characterize the dynamic properties of the protein. The results indicate that the main part of T. versutus ferrocytochrome c-550 exists in solution as a rigid, well-ordered molecule with a secondary structure that is very similar to that of P. denitrificans cytochrome c-550, as observed in crystals. The C-terminal extension, however, is unstructured and highly mobile. The possible origin and function of the extension are discussed.
维氏硫杆菌的细胞色素c-550在一系列氧化还原蛋白中作为电子传递蛋白发挥作用,这使得维氏硫杆菌能够利用甲胺生长。它是一种由134个残基组成的单血红素蛋白,与线粒体细胞色素c相关。与线粒体细胞色素c相比,细胞色素c-550以及其他几种细菌c2型细胞色素都含有一段13 - 16个氨基酸的C末端延伸,其功能未知。进行了核磁共振实验以获取该蛋白在溶液中的结构和动力学信息。为此,使用以13C - 甲醇为生长底物的反硝化副球菌作为异源表达宿主,对维氏硫杆菌细胞色素c-550进行15N和13C标记。获得了该蛋白主链以及β位上1H、15N和13C核的核磁共振归属,并确定了二级结构。进行了15N弛豫研究以表征该蛋白的动力学性质。结果表明,维氏硫杆菌亚铁细胞色素c-550的主要部分在溶液中以刚性、有序的分子形式存在,其二级结构与在晶体中观察到的反硝化副球菌细胞色素c-550非常相似。然而,C末端延伸是无结构的且高度灵活。讨论了该延伸的可能起源和功能。