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运动发酵单胞菌葡萄糖-果糖氧化还原酶的结构:一种含有非解离型NADP的渗透保护周质酶。

The structure of glucose-fructose oxidoreductase from Zymomonas mobilis: an osmoprotective periplasmic enzyme containing non-dissociable NADP.

作者信息

Kingston R L, Scopes R K, Baker E N

机构信息

Department of Biochemistry, Massey University, Palmerston North, New Zealand.

出版信息

Structure. 1996 Dec 15;4(12):1413-28. doi: 10.1016/s0969-2126(96)00149-9.

Abstract

BACKGROUND

The organism Zymomonas mobilis occurs naturally in sugar-rich environments. To protect the bacterium against osmotic shock, the periplasmic enzyme glucose-fructose oxidoreductase (GFOR) produces the compatible, solute sorbitol by reduction of fructose, coupled with the oxidation of glucose to gluconolactone. Hence, Z mobilis can tolerate high concentrations of sugars and this property may be useful in the development of an efficient microbial process for ethanol production. Each enzyme subunit contains tightly associated NADP which is not released during the catalytic cycle.

RESULTS

The structure of GFOR was determined by X-ray crystallography at 2.7 A resolution. Each subunit of the tetrameric enzyme comprises two domains, a classical dinucleotide-binding domain, and a C-terminal domain based on a predominantly antiparallel nine-stranded beta sheet. In the tetramer, the subunits associate to form two extended 18-stranded beta sheets, which pack against each other in a face to face fashion, creating an extensive interface at the core of the tetramer. An N-terminal arm from each subunit wraps around the dinucleotide-binding domain of an adjacent subunit, covering the adenine ring of NADP.

CONCLUSIONS

In GFOR, the NADP is found associated with a classical dinucleotide-binding domain in a conventional fashion. The NADP is effectively buried in the protein-subunit interior as a result of interactions with the N-terminal arm from an adjacent subunit in the tetramer, and with a short helix from the C-terminal domain of the protein. This accounts for NADP's inability to dissociate. The N-terminal arm may also contribute to stabilization of the tetramer. The enzyme has an unexpected structural similarity with the cytoplasmic enzyme glucose-6-phosphate dehydrogenase (G6PD). We hypothesize that both enzymes have diverged from a common ancestor. The mechanism of catalysis is still unclear, but we have identified a conserved structural motif (Glu-Lys-Pro) in the active site of GFOR and G6PD that may be important for catalysis.

摘要

背景

运动发酵单胞菌自然存在于富含糖分的环境中。为保护该细菌免受渗透冲击,周质酶葡萄糖 - 果糖氧化还原酶(GFOR)通过果糖还原产生相容性溶质山梨醇,同时将葡萄糖氧化为葡萄糖酸内酯。因此,运动发酵单胞菌能够耐受高浓度的糖分,这一特性可能有助于开发高效的乙醇微生物生产工艺。每个酶亚基都紧密结合有烟酰胺腺嘌呤二核苷酸磷酸(NADP),在催化循环过程中不会释放。

结果

通过X射线晶体学以2.7埃的分辨率确定了GFOR的结构。四聚体酶的每个亚基包含两个结构域,一个经典的二核苷酸结合结构域和一个基于主要为反平行九股β折叠的C末端结构域。在四聚体中,亚基相互关联形成两个延伸的18股β折叠,它们面对面相互堆积,在四聚体核心处形成广泛的界面。每个亚基的N末端臂围绕相邻亚基的二核苷酸结合结构域缠绕,覆盖NADP的腺嘌呤环。

结论

在GFOR中,NADP以传统方式与经典的二核苷酸结合结构域相关联。由于与四聚体中相邻亚基的N末端臂以及蛋白质C末端结构域的短螺旋相互作用,NADP有效地埋藏在蛋白质亚基内部。这解释了NADP无法解离的原因。N末端臂也可能有助于四聚体的稳定。该酶与细胞质酶葡萄糖 - 6 - 磷酸脱氢酶(G6PD)具有意外的结构相似性。我们推测这两种酶都从共同的祖先分化而来。催化机制仍不清楚,但我们在GFOR和G6PD的活性位点中鉴定出一个保守的结构基序(Glu - Lys - Pro),这可能对催化很重要。

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