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通过核磁共振光谱法测定的苯酚羟化酶蛋白组分P2的溶液结构。

Solution structure of phenol hydroxylase protein component P2 determined by NMR spectroscopy.

作者信息

Qian H, Edlund U, Powlowski J, Shingler V, Sethson I

机构信息

Department of Organic Chemistry, Umeå University, Sweden.

出版信息

Biochemistry. 1997 Jan 21;36(3):495-504. doi: 10.1021/bi9619233.

DOI:10.1021/bi9619233
PMID:9012665
Abstract

Phenol hydroxylase from Pseudomonas sp. CF600 is a member of a family of binuclear iron-center-containing multicomponent oxygenases, which catalyzes the conversion of phenol and some of its methyl-substituted derivatives to catechol. In addition to a reductase component which transfers electrons from NADH, optimal turnover of the hydroxylase requires P2, a protein containing 90 amino acids which is readily resolved from the other components. The three-dimensional solution structure of P2 has been solved by 3D heteronuclear NMR spectroscopy. On the basis of 1206 experimental constraints, including 1060 distance constraints obtained from NOEs, 70 phi dihedral angle constraints, 42 psi dihedral angle constraints, and 34 hydrogen bond constraints, a total of 12 converged structures were obtained. The atomic root mean square deviation for the 12 converged structure with respect to the mean coordinates is 2.48 A for the backbone atoms and 3.85 A for all the heavy atoms. This relatively large uncertainty can be ascribed to conformational flexibility and exchange. The molecular structure of P2 is composed of three helices, six antiparallel beta-strands, one beta-hairpin, and some less ordered regions. This is the first structure among the known multicomponent oxygenases. On the basis of the three-dimensional structure of P2, sequence comparisons with similar proteins from other multicomponent oxygenases suggested that all of these proteins may have a conserved structure in the core regions.

摘要

来自假单胞菌属CF600的苯酚羟化酶是含双核铁中心的多组分加氧酶家族的一员,它催化苯酚及其一些甲基取代衍生物转化为儿茶酚。除了一个从NADH转移电子的还原酶组分外,羟化酶的最佳周转还需要P2,P2是一种含有90个氨基酸的蛋白质,很容易与其他组分分离。P2的三维溶液结构已通过三维异核核磁共振光谱法解析。基于1206个实验约束条件,包括从NOE获得的1060个距离约束、70个φ二面角约束、42个ψ二面角约束和34个氢键约束,总共获得了12个收敛结构。12个收敛结构相对于平均坐标的原子均方根偏差,主链原子为2.48 Å,所有重原子为3.85 Å。这种相对较大的不确定性可归因于构象灵活性和交换。P2的分子结构由三个螺旋、六条反平行β链、一个β发夹和一些不太规则的区域组成。这是已知多组分加氧酶中的第一个结构。基于P2的三维结构,与其他多组分加氧酶的相似蛋白质进行序列比较表明,所有这些蛋白质在核心区域可能具有保守结构。

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