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利用聚合酶链反应扩增产物中重叠限制性酶切片段的单链构象分析快速增强检测线粒体DNA变异

Rapid and enhanced detection of mitochondrial DNA variation using single-strand conformation analysis of superposed restriction enzyme fragments from polymerase chain reaction-amplified products.

作者信息

Barros F, Lareu M V, Salas A, Carracedo A

机构信息

Institute of Legal Medicine, School of Medicine, Santiago de Compostela, Spain.

出版信息

Electrophoresis. 1997 Jan;18(1):52-4. doi: 10.1002/elps.1150180110.

DOI:10.1002/elps.1150180110
PMID:9059820
Abstract

A strategy is described for detecting mitochondrial (mt) DNA variation which permits rapid and straightforward screening for forensic purposes. The method is based on the selection of fragments with adequate length for performing single strand conformation polymorphism (SSCP) analysis selecting a set of restriction enzymes (RE) which yield fragments with prefixed lengths. After digestion of mtDNA by the appropriate enzyme or set of enzymes, SSCP analysis is performed in a semiautomatic electrophoretic system using a silver staining detection method. The conformational changes due to single mutations were therefore found not to change the electrophoretic protocol but to change the relative position of the mutations within the fragment. The discrimination power of this method is estimated to be 90% when two restriction enzymes (MspI and HinfI) are used, but it is considerably higher when other enzymes are added.

摘要

本文描述了一种用于检测线粒体(mt)DNA变异的策略,该策略可用于法医目的的快速直接筛查。该方法基于选择具有足够长度的片段以进行单链构象多态性(SSCP)分析,选择一组能产生具有预定长度片段的限制性内切酶(RE)。在用适当的一种或一组酶消化mtDNA后,使用银染检测方法在半自动电泳系统中进行SSCP分析。因此发现,单突变引起的构象变化不会改变电泳方案,但会改变片段内突变的相对位置。当使用两种限制性内切酶(MspI和HinfI)时,该方法的鉴别力估计为90%,但添加其他酶时鉴别力会显著更高。

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引用本文的文献

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A reduced number of mtSNPs saturates mitochondrial DNA haplotype diversity of worldwide population groups.全球人群线粒体 DNA 单倍型多样性的 mtSNPs 数量减少。
PLoS One. 2010 May 3;5(5):e10218. doi: 10.1371/journal.pone.0010218.
2
Minisequencing mitochondrial DNA pathogenic mutations.线粒体DNA致病突变的微测序
BMC Med Genet. 2008 Apr 10;9:26. doi: 10.1186/1471-2350-9-26.
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Techniques and pitfalls in the detection of pathogenic mitochondrial DNA mutations.致病性线粒体DNA突变检测的技术与陷阱
J Mol Diagn. 2003 Nov;5(4):197-208. doi: 10.1016/S1525-1578(10)60474-6.
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Mutation analysis of the entire mitochondrial genome using denaturing high performance liquid chromatography.使用变性高效液相色谱法对整个线粒体基因组进行突变分析。
Nucleic Acids Res. 2000 Oct 15;28(20):E89. doi: 10.1093/nar/28.20.e89.