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水解抗体中活性位点接触残基的定点诱变:参与过渡态稳定的必需组氨酸的证据。

Site-directed mutagenesis of active site contact residues in a hydrolytic abzyme: evidence for an essential histidine involved in transition state stabilization.

作者信息

Miyashita H, Hara T, Tanimura R, Fukuyama S, Cagnon C, Kohara A, Fujii I

机构信息

Protein Engineering Research Institute, Suita, Osaka, Japan.

出版信息

J Mol Biol. 1997 Apr 18;267(5):1247-57. doi: 10.1006/jmbi.1997.0938.

Abstract

Specific molecular interactions involved in catalysis by antibody 6D9 were investigated by site-directed mutagenesis. The catalytic antibody 6D9, which was generated against a transition state analog (III), hydrolyzes a non-bioactive chloramphenicol monoester derivative (I) to produce chloramphenicol (II). Construction of a three-dimensional molecular model of 6D9 and sequence comparison within a panel of related antibodies suggested candidates for catalytic residues, His (L27d), Tyr (L32), Tyr (H58) and Arg (H100b); these were targeted for the site-directed mutagenesis study. The Y-H58-F and R-H100b-A mutants possessed catalytic activities comparable to that of the wild-type, and the Y-H58-H and Y-L32-F mutant displayed an approximately fivefold decrease in k(cat)/Km. In the transition state analysis, the plots of logK(TSA) versus log(k(cat)/Km) for the mutants are linear, with a slope of approximately 1.0, indicating that the entire hapten-binding energy in the mutants is also utilized to bind the transition state and to accelerate the catalysis. In addition, a dramatic change in the catalytic activity was observed when the histidine residue (27d) in the CDR1 light chain was replaced with alanine. The H-L27d-A mutant had no detectable catalytic activity. This mutation led to a large, 40-fold reduction in transition state binding, with no change in substrate binding. Coupled with the previous kinetic studies and chemical modifications of the intact 6D9 antibody, this mutagenesis study has demonstrated that His L27d plays an essential role in stabilization of the transition state, the mechanism of catalysis by the 6D9 antibody.

摘要

通过定点诱变研究了抗体6D9催化过程中涉及的特定分子相互作用。催化抗体6D9是针对过渡态类似物(III)产生的,它能水解一种无生物活性的氯霉素单酯衍生物(I)生成氯霉素(II)。构建6D9的三维分子模型并在一组相关抗体中进行序列比较,确定了催化残基的候选者,即组氨酸(L27d)、酪氨酸(L32)、酪氨酸(H58)和精氨酸(H100b);这些被作为定点诱变研究的目标。Y-H58-F和R-H100b-A突变体具有与野生型相当的催化活性,而Y-H58-H和Y-L32-F突变体的k(cat)/Km下降了约五倍。在过渡态分析中,突变体的logK(TSA)对log(k(cat)/Km)的图呈线性,斜率约为1.0,表明突变体中整个半抗原结合能也用于结合过渡态并加速催化。此外,当互补决定区1轻链中的组氨酸残基(27d)被丙氨酸取代时,观察到催化活性发生了显著变化。H-L27d-A突变体没有可检测到的催化活性。这种突变导致过渡态结合大幅减少40倍,而底物结合没有变化。结合之前对完整6D9抗体的动力学研究和化学修饰,这项诱变研究表明组氨酸L27d在过渡态稳定中起关键作用,这是6D9抗体的催化机制。

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