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酪氨酸108在人谷胱甘肽转移酶P1-1催化机制中的多功能作用。Y108F突变酶的晶体学和动力学研究。

Multifunctional role of Tyr 108 in the catalytic mechanism of human glutathione transferase P1-1. Crystallographic and kinetic studies on the Y108F mutant enzyme.

作者信息

Lo Bello M, Oakley A J, Battistoni A, Mazzetti A P, Nuccetelli M, Mazzarese G, Rossjohn J, Parker M W, Ricci G

机构信息

Department of Biology, University of Rome Tor Vergata, Italy.

出版信息

Biochemistry. 1997 May 20;36(20):6207-17. doi: 10.1021/bi962813z.

Abstract

The possible role of the hydroxyl group of Tyr 108 in the catalytic mechanism of human glutathione transferase P1-1 has been investigated by means of site-directed mutagenesis, steady-state kinetic analysis, and crystallographic studies. Three representative cosubstrates have been used, i.e. ethacrynic acid, 7-chloro-4-nitrobenz-2-oxa-1,3-diazole, and 1-chloro-2,4-dinitrobenzene. In the presence of ethacrynic acid, the enzyme follows a rapid equilibrium random bi-bi mechanism with a rate-limiting step which occurs after the addition of the substrates and before the release of products. The replacement of Tyr 108 with Phe yields a 14-fold decrease of k(cat), while it does not change appreciably the affinity of the H site for the substrate. In this case, it would appear that the role of the hydroxyl function is to stabilize the transition state for the chemical step, i.e. the Michael addition of GSH to the electrophilic substrate. Crystallographic data are compatible with this conclusion showing the hydroxyl group of Y108 in hydrogen bonding distance of the ketone moiety of ethacrynic acid [Oakley, A. J., Rossjohn, J., Lo Bello, M., Caccuri, A. M., Federici, G., & Parker, M. W. (1997) Biochemistry 36, 576-585]. Moreover, no structural differences are observed between the Y108F mutant and the wild type, suggesting that the removal of the hydroxyl group is solely responsible for the loss of activity. A different involvement of Tyr 108 appears in the catalyzed conjugation of 7-chloro-4-nitrobenz-2-oxa-1,3-diazole with GSH in which the rate-limiting step is of a physical nature, probably a structural transition of the ternary complex. The substitution of Tyr 108 yields an approximately 7-fold increase of k(cat) and a constant k(cat)/Km(NBD-Cl) value. Lack of a critical hydrogen bond between 7-chloro-4-nitrobenz-2-oxa-1,3-diazole and Tyr 108 appears to be the basis of the increased k(cat). In the 1-chloro-2,4-dinitrobenzene/GSH system, no appreciable changes of kinetics parameters are found in the Y108F mutant. We conclude that Y108 has a multifunctional role in glutathione transferase P1-1 catalysis, depending on the nature of the electrophilic cosubstrate.

摘要

通过定点诱变、稳态动力学分析和晶体学研究,对人谷胱甘肽转移酶P1-1催化机制中Tyr 108羟基的可能作用进行了研究。使用了三种代表性的共底物,即依他尼酸、7-氯-4-硝基苯并-2-恶唑-1,3-二氮杂茂和1-氯-2,4-二硝基苯。在依他尼酸存在下,该酶遵循快速平衡随机双底物双产物机制,限速步骤发生在底物添加后和产物释放前。用苯丙氨酸取代Tyr 108会使k(cat)降低14倍,而对H位点与底物的亲和力没有明显影响。在这种情况下,羟基的作用似乎是稳定化学步骤的过渡态,即谷胱甘肽对亲电底物的迈克尔加成。晶体学数据与这一结论相符,显示Y108的羟基与依他尼酸酮部分的氢键距离[Oakley, A. J., Rossjohn, J., Lo Bello, M., Caccuri, A. M., Federici, G., & Parker, M. W. (1997) Biochemistry 36, 576 - 585]。此外,Y108F突变体与野生型之间未观察到结构差异,这表明羟基的去除是活性丧失的唯一原因。Tyr 108在7-氯-4-硝基苯并-2-恶唑-1,3-二氮杂茂与谷胱甘肽的催化共轭反应中表现出不同的作用,其中限速步骤是物理性质的,可能是三元复合物的结构转变。Tyr 108的取代使k(cat)增加约7倍,且k(cat)/Km(NBD-Cl)值恒定。7-氯-4-硝基苯并-2-恶唑-1,3-二氮杂茂与Tyr 108之间缺乏关键氢键似乎是k(cat)增加的原因。在1-氯-2,4-二硝基苯/谷胱甘肽系统中,Y108F突变体的动力学参数没有明显变化。我们得出结论,Y108在谷胱甘肽转移酶P1-1催化中具有多功能作用,这取决于亲电共底物的性质。

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