Roberts V A, Nachman R J, Coast G M, Hariharan M, Chung J S, Holman G M, Williams H, Tainer J A
Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Chem Biol. 1997 Feb;4(2):105-17. doi: 10.1016/s1074-5521(97)90254-4.
Neuropeptides are examples of small, flexible molecules that bind to receptors and induce signal transduction, thereby eliciting biological activity. The multifunctional insect kinin neuropeptides retain full activity when reduced to only their carboxy-terminal pentapeptide (Phe1-X2-X3-Trp4-Gly5-NH2), thereby allowing extensive structure-function studies and conformational analysis.
A combined experimental and theoretical analysis of the insect kinin carboxy-terminal pentapeptide was used to probe the role of each residue, define the bioactive conformation, and design a constrained bioactive analog. Coupling receptor-binding data with two biological activity assays allowed receptor binding and signal transduction to be differentiated. A preferred beta-turn conformation, found for residues 1-4 by molecular dynamics simulations, was tested by designing a conformationally restricted cyclic hexapeptide. This cyclic analog showed a preference for the beta-turn conformation, as shown by a conformational search and nuclear magnetic resonance spectroscopy, and it showed stronger receptor binding but decreased activity relative to highly active linear analogs.
Each residue of the insect kinin carboxy-terminal pentapeptide has a distinct role in conformational preference, specific receptor interactions or signal transduction. The beta-turn preference of residues Phe1-X2-X3-Trp4 implicates this as the bioactive conformation. The amidated carboxyl terminus, required for activity in many neuropeptide families, may be generally important for signal transduction and its inclusion may therefore be essential for agonist design.
神经肽是一类小分子、柔性分子,它们与受体结合并诱导信号转导,从而引发生物活性。多功能昆虫激肽神经肽在还原为仅其羧基末端五肽(Phe1-X2-X3-Trp4-Gly5-NH2)时仍保留全部活性,从而允许进行广泛的结构-功能研究和构象分析。
对昆虫激肽羧基末端五肽进行了实验与理论相结合的分析,以探究每个残基的作用、确定生物活性构象并设计一种受限的生物活性类似物。将受体结合数据与两种生物活性测定相结合,可区分受体结合和信号转导。通过设计一种构象受限的环六肽,对分子动力学模拟发现的1-4位残基的优选β-转角构象进行了测试。这种环类似物表现出对β-转角构象的偏好,这通过构象搜索和核磁共振光谱得以证明,并且它表现出更强的受体结合能力,但相对于高活性线性类似物,其活性有所降低。
昆虫激肽羧基末端五肽的每个残基在构象偏好、特定受体相互作用或信号转导中都具有独特作用。Phe1-X2-X3-Trp4残基对β-转角的偏好表明这是生物活性构象。许多神经肽家族中活性所需的酰胺化羧基末端可能对信号转导普遍重要,因此其包含可能对激动剂设计至关重要。