Lopez P J, Guillerez J, Sousa R, Dreyfus M
Laboratoire de Génétique Moléculaire (CNRS URA 1302), Ecole Normale Supérieure, Paris, France.
J Mol Biol. 1997 May 30;269(1):41-51. doi: 10.1006/jmbi.1997.1039.
In vitro, after binding to the promoter to form a catalytically active complex, RNA polymerases abortively cycle over the first transcribed nucleotides (initial transcribed sequence or ITS) before leaving the promoter. With the bacteriophage T7 enzyme, the extent of abortive transcription varies with the nature of the ITS and with the elongation speed of the polymerase. Here, we compare in vitro and in vivo the yield of long transcripts from T7 promoters, with two different ITSs, the T7 gene10 and the lactose operon ITSs, and two different T7 RNA polymerases, the wild-type and a 2.7-fold slower mutant (G645A). The use of non-cognate ITS and/or slow polymerase decreases the yield of long transcripts in vitro and in vivo in a parallel fashion, with low polymerase speed and non-cognate ITS acting synergistically. In vitro, this decrease is mirrored by an increase in the average number of abortive cycles the enzyme undergoes before leaving the promoter; specifically, with the G645A mutant, transcript release is favored at any ITS position, whereas with the lac ITS it is particularly frequent at positions five and six following the incorporation of uridine residues. Hence, the more abortive cycles per long transcript synthesis in vitro, the lower the yield of long transcripts in vitro or in vivo. We conclude that the duration of abortive cycling can limit long transcript synthesis in vivo, as in vitro. Under conditions where cycling is minimal (wild-type polymerase, gene10 ITS), T7 promoter drives the synthesis of three long transcripts per second at 37 degrees C in vivo, a figure higher than for any Escherichia coli promoter.
在体外,RNA聚合酶与启动子结合形成催化活性复合物后,在离开启动子之前会在最初转录的核苷酸(初始转录序列或ITS)上进行无效循环。对于噬菌体T7酶,无效转录的程度随ITS的性质和聚合酶的延伸速度而变化。在这里,我们在体外和体内比较了来自T7启动子的长转录本的产量,使用了两种不同的ITS,即T7基因10和乳糖操纵子ITS,以及两种不同的T7 RNA聚合酶,野生型和一个慢2.7倍的突变体(G645A)。使用非同源ITS和/或慢速聚合酶会以平行方式降低体外和体内长转录本的产量,低聚合酶速度和非同源ITS起协同作用。在体外,这种降低反映在酶离开启动子之前经历的平均无效循环次数增加;具体而言,对于G645A突变体,在任何ITS位置转录本释放都更受青睐,而对于乳糖操纵子ITS,在掺入尿苷残基后的第五和第六位置尤其频繁。因此,体外每合成一个长转录本的无效循环次数越多,体外或体内长转录本的产量就越低。我们得出结论,无效循环的持续时间可以像在体外一样限制体内长转录本的合成。在循环最少的条件下(野生型聚合酶,基因10 ITS),T7启动子在体内37℃时每秒驱动合成三个长转录本,这一数字高于任何大肠杆菌启动子。