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本文引用的文献
1
Kinked DNA.
Nature. 1997 Apr 10;386(6625):563. doi: 10.1038/386563a0.
2
Microscopic DNA flexibility analysis. Probing the base composition and ion dependence of minor groove compression with an artificial dna bending agent.
J Biol Chem. 1996 Nov 15;271(46):29126-35. doi: 10.1074/jbc.271.46.29126.
3
The design of an agent to bend DNA.
Proc Natl Acad Sci U S A. 1996 Oct 29;93(22):12122-7. doi: 10.1073/pnas.93.22.12122.
4
Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope.
Annu Rev Biophys Biomol Struct. 1996;25:395-429. doi: 10.1146/annurev.bb.25.060196.002143.
5
DNA binding to mica correlates with cationic radius: assay by atomic force microscopy.
Biophys J. 1996 Apr;70(4):1933-9. doi: 10.1016/S0006-3495(96)79757-6.
6
The organic crystallizing agent 2-methyl-2,4-pentanediol reduces DNA curvature by means of structural changes in A-tracts.
J Biol Chem. 1996 Jul 26;271(30):17911-9. doi: 10.1074/jbc.271.30.17911.
7
The effects of sequence context on DNA curvature.
Proc Natl Acad Sci U S A. 1996 Apr 30;93(9):3847-52. doi: 10.1073/pnas.93.9.3847.
8
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.
Science. 1996 Feb 9;271(5250):795-9. doi: 10.1126/science.271.5250.795.
9
Intercalation, DNA kinking, and the control of transcription.
Science. 1996 Feb 9;271(5250):778-84. doi: 10.1126/science.271.5250.778.
10
Bending and torsional flexibility of G/C-rich sequences as determined by cyclization assays.
J Biol Chem. 1995 Dec 15;270(50):29945-52. doi: 10.1074/jbc.270.50.29945.
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