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Representation of amino acid sequences in terms of interaction energy in protein globules.

作者信息

Berezovsky I N, Tumanyan V G, Esipova N G

机构信息

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.

出版信息

FEBS Lett. 1997 Nov 24;418(1-2):43-6. doi: 10.1016/s0014-5793(97)01346-x.

DOI:10.1016/s0014-5793(97)01346-x
PMID:9414092
Abstract

We suggest a new simple approach for comparing the primary structure of proteins and their spatial structure. It relies on the one-to-one correspondence between each residue of the polypeptide chain and the energy of van der Waals interactions between the regions of the native globule flanking this residue. The method obviates the sophisticated geometrical criteria for estimating similarity between spatial structures. Besides, it permits one to analyze structural units of different scale.

摘要

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