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一种MGSA/GRO假基因的鉴定与特征分析。

Identification and characterization of an MGSA/GRO pseudogene.

作者信息

Shattuck-Brandt R L, Wood L D, Richmond A

机构信息

Department of Cell Biology, Vanderbilt University School of Medicine, Nashville, TN, 37212-2637, USA.

出版信息

DNA Seq. 1997;7(6):379-86. doi: 10.3109/10425179709034060.

Abstract

Three linked genes for the CXC-chemokine melanoma growth stimulatory activity/growth related protein (MGSA/GRO) have been previously characterized and mapped to chromosome 4q12-q13. We have isolated and characterized a pseudogene, MGSA/GRO delta, which is 83% similar to the MGSA/GRO alpha gene in the region spanning the 5' UTR, first and second exons, and the first intron. The 5' upstream sequence for the MGSA/GRO delta gene, which is also very similar to the MGSA/GRO alpha, beta, gamma genes, contains a conserved NF-kappa B motif, a TATA box, and a transcription initiation site. However, the sequence becomes markedly divergent after the second exon and hybridization studies indicate that sequences similar to the third and forth exons of other MGSA/GRO genes are not present in this gene. Additional sequence differences include alteration of the MGSA/GRO delta translation initiation codon and a one base insertion resulting in an apparent frame shift and early termination within exon 2. Multiple mutations such as these are characteristic of pseudogenes.

摘要

先前已对CXC趋化因子黑素瘤生长刺激活性/生长相关蛋白(MGSA/GRO)的三个连锁基因进行了表征,并将其定位到4号染色体q12-q13区域。我们分离并鉴定了一个假基因MGSA/GROδ,在跨越5'非翻译区、第一和第二外显子以及第一内含子的区域中,它与MGSA/GROα基因有83%的相似性。MGSA/GROδ基因的5'上游序列,也与MGSA/GROα、β、γ基因非常相似,包含一个保守的NF-κB基序、一个TATA盒和一个转录起始位点。然而,在第二外显子之后序列明显不同,杂交研究表明该基因中不存在与其他MGSA/GRO基因的第三和第四外显子相似的序列。其他序列差异包括MGSA/GROδ翻译起始密码子的改变以及一个碱基的插入,导致外显子2内出现明显的移码和提前终止。这样的多个突变是假基因的特征。

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