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克氏锥虫基因组计划中转录序列(ESTs)的鉴定。

Identification of transcribed sequences (ESTs) in the Trypanosoma cruzi genome project.

作者信息

Brandão A, Urmenyi T, Rondinelli E, Gonzalez A, de Miranda A B, Degrave W

机构信息

Departamento de Bioquímica e Biologia Molecular, Instituto Oswaldo Cruz, Rio de Janeiro, Brasil.

出版信息

Mem Inst Oswaldo Cruz. 1997 Nov-Dec;92(6):863-6. doi: 10.1590/s0074-02761997000600024.

DOI:10.1590/s0074-02761997000600024
PMID:9580492
Abstract

Random single pass sequencing of cDNA fragments, also known as generation of Expressed Sequence Tags (ESTs), has been highly successful in the study of the gene content of higher organisms, and forms an integral part of most genome projects, with the objective to identify new genes and targets for disease control and prevention and to generate mapping probes. In the Trypanosoma cruzi genome project, EST sequencing has also been a starting point, and here we report data on the first 797 sequences obtained, partly from a CL Brener epimastigote non-normalized library, partly on a normalized library. Only around 30% of the sequences obtained showed similarity with Genbank and dbEST databases, half of which with sequences already reported for T. cruzi.

摘要

对互补DNA(cDNA)片段进行随机单通道测序,即所谓的表达序列标签(EST)生成,在高等生物基因含量研究中取得了巨大成功,并且是大多数基因组计划的重要组成部分,目的是识别新基因以及疾病控制与预防的靶点,并生成定位探针。在克氏锥虫基因组计划中,EST测序也是一个起点,在此我们报告首批获得的797个序列的数据,部分来自CL Brener型无鞭毛体非标准化文库,部分来自标准化文库。所获得的序列中只有约30%与Genbank和dbEST数据库中的序列相似,其中一半与已报道的克氏锥虫序列相似。

相似文献

1
Identification of transcribed sequences (ESTs) in the Trypanosoma cruzi genome project.克氏锥虫基因组计划中转录序列(ESTs)的鉴定。
Mem Inst Oswaldo Cruz. 1997 Nov-Dec;92(6):863-6. doi: 10.1590/s0074-02761997000600024.
2
[Trypanosoma cruzi genome: transcriptional mapping and karyotype correlation; molecular characterization of a surface antigen from the Tc13 family].[克氏锥虫基因组:转录图谱与核型相关性;Tc13家族表面抗原的分子特征]
Medicina (B Aires). 1999;59 Suppl 2:11-7.
3
Gene discovery through expressed sequence Tag sequencing in Trypanosoma cruzi.通过克氏锥虫表达序列标签测序进行基因发现。
Infect Immun. 1998 Nov;66(11):5393-8. doi: 10.1128/IAI.66.11.5393-5398.1998.
4
Construction of a normalized cDNA library for the Trypanosoma cruzi genome project.为克氏锥虫基因组计划构建标准化cDNA文库。
J Eukaryot Microbiol. 1999 Sep-Oct;46(5):542-4. doi: 10.1111/j.1550-7408.1999.tb06072.x.
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A refined molecular karyotype for the reference strain of the Trypanosoma cruzi genome project (clone CL Brener) by assignment of chromosome markers.通过染色体标记的分配,为克氏锥虫基因组计划的参考菌株(克隆CL Brener)构建精细分子核型。
Gene. 2003 Apr 10;308:53-65. doi: 10.1016/s0378-1119(03)00489-x.
6
Generation and analysis of expressed sequence tags from Trypanosoma cruzi trypomastigote and amastigote cDNA libraries.克氏锥虫锥鞭毛体和无鞭毛体cDNA文库表达序列标签的生成与分析
Mol Biochem Parasitol. 2004 Aug;136(2):221-5. doi: 10.1016/j.molbiopara.2004.04.002.
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Parasite genome projects and the Trypanosoma cruzi genome initiative.
Mem Inst Oswaldo Cruz. 1997 Nov-Dec;92(6):859-62. doi: 10.1590/s0074-02761997000600023.
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Complete sequence of a 93.4-kb contig from chromosome 3 of Trypanosoma cruzi containing a strand-switch region.来自克氏锥虫3号染色体的一个包含链转换区的93.4千碱基重叠群的完整序列。
Genome Res. 1998 Aug;8(8):809-16. doi: 10.1101/gr.8.8.809.
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Trypanosoma cruzi: a putative vacuolar ATP synthase subunit and a CAAX prenyl protease-encoding gene, as examples of gene identification in genome projects.克氏锥虫:一个假定的液泡ATP合酶亚基和一个编码CAAX异戊二烯基蛋白酶的基因,作为基因组计划中基因鉴定的实例。
Exp Parasitol. 2000 Jul;95(3):176-86. doi: 10.1006/expr.2000.4529.
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Identification of genes encoding hypothetical proteins in open-reading frame expressed sequence tags from mammalian stages of Trypanosoma cruzi.从克氏锥虫哺乳动物阶段的开放阅读框表达序列标签中鉴定编码假定蛋白质的基因。
Genet Mol Res. 2011;10(3):1589-630. doi: 10.4238/vol10-3gmr1140.

引用本文的文献

1
Trypanosomatid comparative genomics: Contributions to the study of parasite biology and different parasitic diseases.原虫比较基因组学:对寄生虫生物学和不同寄生虫病研究的贡献。
Genet Mol Biol. 2012 Jan;35(1):1-17. doi: 10.1590/s1415-47572012005000008. Epub 2012 Jan 20.
2
The steady-state transcriptome of the four major life-cycle stages of Trypanosoma cruzi.克氏锥虫四个主要生命周期阶段的稳态转录组。
BMC Genomics. 2009 Aug 7;10:370. doi: 10.1186/1471-2164-10-370.
3
TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi.
克鲁斯锥虫数据库(TcruziDB):用于克鲁斯锥虫的一个综合后基因组学社区资源。
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D428-31. doi: 10.1093/nar/gkj108.
4
Gene survey of the pathogenic protozoan Trypanosoma cruzi.致病性原生动物克氏锥虫的基因调查。
Genome Res. 2000 Aug;10(8):1103-7. doi: 10.1101/gr.10.8.1103.
5
Physical mapping of a 670-kb region of chromosomes XVI and XVII from the human protozoan parasite Trypanosoma cruzi encompassing the genes for two immunodominant antigens.对来自人类原生动物寄生虫克氏锥虫的16号和17号染色体上一个670千碱基区域进行物理图谱分析,该区域包含两种免疫显性抗原的基因。
Genome Res. 1999 Dec;9(12):1268-76. doi: 10.1101/gr.9.12.1268.
6
Gene discovery through expressed sequence Tag sequencing in Trypanosoma cruzi.通过克氏锥虫表达序列标签测序进行基因发现。
Infect Immun. 1998 Nov;66(11):5393-8. doi: 10.1128/IAI.66.11.5393-5398.1998.