Szczyglowski K, Kapranov P, Hamburger D, de Bruijn F J
Michigan State University-Department of Energy Plant Research Laboratory, East Lansing 48824-1312, USA.
Plant Mol Biol. 1998 Jul;37(4):651-61. doi: 10.1023/a:1006043428636.
A novel nodule-specific gene, LjNOD70, associated with late stages in Lotus japonicus nodule development and/or functioning was characterized. The LjNOD70 gene is a member of a small family of closely related L. japonicus genes. Two major mRNA species corresponding to the LjNOD70 gene were identified in nodules and shown to be the result of a mechanism resembling alternative splicing. The longer, presumably unspliced, mRNA species was shown to contain a single open reading frame (ORF), encoding a polytopic hydrophobic protein, LjN70, with a predicted molecular mass of 70 kDa. The second, presumably spliced, mRNA species was shown to be less abundant in nodules. The absence of the presumptive 'intron' was found to divide the reading frame into an upstream and a downstream ORF encoding the partial N- and C-terminal regions of the LjN70 protein, respectively. The predicted amino acid sequence of nodulin LjN70 revealed structural features characteristic of transport proteins, and was found to share similarity with the oxalate/formate exchange protein of Oxalobacter formigenes. Therefore, we postulate that the L. japonicus LjNOD70 gene family encodes nodule-specific transport proteins, which may have evolved as a result of exon-intron shuffling.
我们鉴定了一个与百脉根根瘤发育和/或功能后期相关的新型根瘤特异性基因LjNOD70。LjNOD70基因是百脉根中一个紧密相关的小基因家族的成员。在根瘤中鉴定出了与LjNOD70基因对应的两种主要mRNA种类,并表明它们是一种类似于可变剪接机制的结果。较长的、可能未剪接的mRNA种类显示包含一个单一的开放阅读框(ORF),编码一种多跨膜疏水蛋白LjN70,预测分子量为70 kDa。第二种、可能剪接的mRNA种类在根瘤中的丰度较低。发现推定的“内含子”缺失将阅读框分为上游和下游ORF,分别编码LjN70蛋白的部分N端和C端区域。根瘤蛋白LjN70的预测氨基酸序列揭示了转运蛋白的结构特征,并发现与产甲酸草酸杆菌的草酸盐/甲酸盐交换蛋白具有相似性。因此,我们推测百脉根LjNOD70基因家族编码根瘤特异性转运蛋白,这可能是外显子-内含子重排的结果。