Simonic I, Gericke G S, Ott J, Weber J L
MRC Neurogenetics Research Laboratory, Arcadia, South Africa.
Am J Hum Genet. 1998 Sep;63(3):839-46. doi: 10.1086/302002.
Because gene-mapping efforts, using large kindreds and parametric methods of analysis, for the neurologic disorder Tourette syndrome have failed, efforts are being redirected toward association studies in young, genetically isolated populations. The availability of dense marker maps makes it feasible to search for association throughout the entire genome. We report the results of such a genome scan using DNA samples from Tourette patients and unaffected control subjects from the South African Afrikaner population. To optimize mapping efficiency, we chose a two-step strategy. First, we screened pools of DNA samples from both affected and control individuals, using a dense collection of 1,167 short tandem-repeat polymorphisms distributed throughout the genome. Second, we typed those markers displaying evidence of allele frequency-distribution shifts, along with additional tightly linked markers, using DNA from each affected and unaffected individual. To reduce false positives, we tested two independent groups of case and control subjects. Strongest evidence for association (P values 10-2 to 10-5) were obtained for markers within chromosomal regions encompassing D2S1790 near the chromosome 2 centromere, D6S477 on distal 6p, D8S257 on 8q, D11S933 on 11q, D14S1003 on proximal 14q, D20S1085 on distal 20q, and D21S1252 on 21q.
由于利用大家族和参数分析方法进行的抽动秽语综合征这一神经系统疾病的基因定位研究未能成功,研究方向正转向对年轻的、基因隔离人群的关联研究。高密度标记图谱的可得性使得在整个基因组中搜索关联成为可能。我们报告了一项使用来自南非阿非利卡人群体的抽动秽语症患者和未受影响对照者的DNA样本进行的全基因组扫描结果。为了优化定位效率,我们选择了两步策略。首先,我们使用分布于整个基因组的1167个短串联重复多态性的密集集合,对来自患病个体和对照个体的DNA样本池进行筛选。其次,我们使用来自每个患病和未患病个体的DNA,对那些显示出等位基因频率分布偏移证据的标记以及其他紧密连锁的标记进行分型。为了减少假阳性,我们对两组独立的病例和对照受试者进行了检测。在包含2号染色体着丝粒附近的D2S1790、6号染色体远端的D6S477、8号染色体的D8S257、11号染色体的D11S933、14号染色体近端的D14S1003、20号染色体远端的D20S1085以及21号染色体的D21S1252的染色体区域内的标记,获得了最强的关联证据(P值为10-2至10-5)。