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单个LCR超敏位点协同作用,形成一个跨越人类β-珠蛋白基因座的开放染色质结构域。

Individual LCR hypersensitive sites cooperate to generate an open chromatin domain spanning the human beta-globin locus.

作者信息

Li G, Lim K C, Engel J D, Bungert J

机构信息

Department of Biochemistry, Molecular Biology and Cell Biology, Northwestern University, Evanston, IL 60208-3500, USA.

出版信息

Genes Cells. 1998 Jul;3(7):415-29. doi: 10.1046/j.1365-2443.1998.00200.x.

DOI:10.1046/j.1365-2443.1998.00200.x
PMID:9753424
Abstract

BACKGROUND

The human beta-globin locus control region (LCR) is composed of five DNase I hypersensitive (HS) sites located 5' to the multiple genes it regulates. The LCR has been shown to comprise, among other essential properties, an activity that is required for generating a chromatin structure which renders the entire beta-globin gene locus accessible to exogenous nucleases. This nuclease-sensitive state is generally believed to be reflective of the chromatin environment that is permissive for transcriptional activation of the globin genes.

RESULTS

Here we show, in mice bearing intact YAC transgenes that encompass the whole human beta-globin locus, that the deletion of individual core LCR HS sites negatively affects the ability of the LCR to confer this open chromatin conformation throughout the locus, and when analysed in concert with the effect that these same mutations have on transcription, the data show that the chromatin opening activity is a necessary, but not sufficient, prerequisite for globin gene expression. The results also show that after deletion of individual hypersensitive sites, the mutated LCR is no longer able to provide an accessible chromatin environment that is independent from the site of YAC transgene integration.

CONCLUSIONS

These experiments provide further evidence for the hypothesis that the HS sites must act cooperatively to fulfil the multiple functions that are attributable to the LCR.

摘要

背景

人类β-珠蛋白基因座控制区(LCR)由五个位于其调控的多个基因5'端的DNA酶I超敏(HS)位点组成。LCR已被证明除其他基本特性外,还具有一种活性,这种活性对于产生一种染色质结构是必需的,该结构使整个β-珠蛋白基因座对外源核酸酶可及。这种核酸酶敏感状态通常被认为反映了有利于珠蛋白基因转录激活的染色质环境。

结果

在这里,我们在携带包含整个人类β-珠蛋白基因座的完整酵母人工染色体(YAC)转基因的小鼠中表明,单个核心LCR HS位点的缺失会对LCR在整个基因座赋予这种开放染色质构象的能力产生负面影响,并且当与这些相同突变对转录的影响一起分析时,数据表明染色质开放活性是珠蛋白基因表达的必要但非充分前提条件。结果还表明,在单个超敏位点缺失后,突变的LCR不再能够提供独立于YAC转基因整合位点的可及染色质环境。

结论

这些实验为以下假设提供了进一步的证据,即HS位点必须协同作用以履行归因于LCR的多种功能。

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引用本文的文献

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The hypersensitive sites of the murine β-globin locus control region act independently to affect nuclear localization and transcriptional elongation.鼠类β-珠蛋白基因调控区的超敏位点可独立作用,影响核定位和转录延伸。
Blood. 2012 Apr 19;119(16):3820-7. doi: 10.1182/blood-2011-09-380485. Epub 2012 Feb 29.
2
Differential requirement of a distal regulatory region for pre-initiation complex formation at globin gene promoters.珠蛋白基因启动子上预起始复合物形成对远端调控区域的差异性需求。
Nucleic Acids Res. 2009 Sep;37(16):5295-308. doi: 10.1093/nar/gkp545. Epub 2009 Jun 30.
3
Deletion of the core region of 5' HS2 of the mouse beta-globin locus control region reveals a distinct effect in comparison with human beta-globin transgenes.
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Blood. 2006 Jan 15;107(2):821-6. doi: 10.1182/blood-2005-06-2308. Epub 2005 Sep 27.
4
Spatial organization of gene expression: the active chromatin hub.基因表达的空间组织:活性染色质枢纽
Chromosome Res. 2003;11(5):447-59. doi: 10.1023/a:1024922626726.
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Beta-globin locus control region HS2 and HS3 interact structurally and functionally.β-珠蛋白基因座控制区HS2和HS3在结构和功能上相互作用。
Nucleic Acids Res. 2003 Feb 15;31(4):1180-90. doi: 10.1093/nar/gkg217.
6
Reconstitution of human beta-globin locus control region hypersensitive sites in the absence of chromatin assembly.在缺乏染色质组装的情况下重建人β-珠蛋白基因座控制区超敏位点
Mol Cell Biol. 2001 Apr;21(8):2629-40. doi: 10.1128/MCB.21.8.2629-2640.2001.
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Targeting a SWI/SNF-related chromatin remodeling complex to the beta-globin promoter in erythroid cells.在红系细胞中将一种与SWI/SNF相关的染色质重塑复合物靶向至β-珠蛋白启动子。
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